Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02441 ATGTTCATTGTTGCTGGAATTTTCTTTGTCAGGAAAACACGTGGTATGGGAGCTGCCGGTAAGTTGAAGTCCCACCGAAGAAGGCAGAGATGGGCTGACAAATCATACAAGAAATCCCATCTTGGCAATGAATGGAAGAAGCCATTTGCCGGATCCTCTCATGCTAAAGGCATTGTTCTTGAAAAAATTGGTATTGAAGCTAAGCAGCCAAACTCTGCTATTAGAAAATGTGCTCGAGTACAGTTAATTAAGAATGGAAAGAAGATTGCAGCCTTTGTGCCAAACGATTGTTGCTTAAACTTTATCGAAGAAAATGATGAGGTGCTGATTGCAGGATTTGGAAGAAAAGGGCATGCTGTTGGAGATATCCCTGGAGTCAGGTTCAAGGTTGTGAAGGTATCAGGGGTATCTCTATTGGCACTTTTCaaagagaagaaggagaagccAAGGTCTTA 455 0.4022 MFIVAGIFFVRKTRGMGAAGKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDCCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02441 151 CDD Ribosomal_S23 35 148 IPR005680 GO:0003735|GO:0006412|GO:0015935
Bva07g02441 151 SUPERFAMILY Nucleic acid-binding proteins 29 149 IPR012340 -
Bva07g02441 151 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 10 151 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva07g02441 151 ProSitePatterns Ribosomal protein S12 signature. 68 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva07g02441 151 TIGRFAM uS12_E_A: ribosomal protein uS12 15 150 IPR005680 GO:0003735|GO:0006412|GO:0015935
Bva07g02441 151 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 25 151 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva07g02441 151 Pfam Ribosomal protein S12/S23 40 150 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva07g02441 151 PANTHER BNACNNG03140D PROTEIN 10 151 - -
Bva07g02441 151 Gene3D - 34 151 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02441 Bva-Chr7 19701844 19702505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02441 12 151 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 93.571 3.76e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02441 K02973 - ncol:116249347 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02441 07 19701844 19702505 Bva07g02441 07 19701844 19702505 ECH
Bva04g02613 04 23225122 23226844 Bva07g02441 07 19701844 19702505 ECH
Bva13g01915 13 15568280 15569754 Bva07g02441 07 19701844 19702505 ECH