Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02423 ATGATGTCCCAAGAAAAGCTTTCGATTAATCCCACTATCAGAGGATTAGTTCAAGACCCAATCTCAACCTCAACCTCAACCTCAAACTCAAACCCTAGCTCTACCTCTAACCCTAATTCAAATCCAGTCGtcaagaggaagaggaatCTTCCAGGAACACCAGATCCAGATTCAGAAGTGATAGCTCTCTCGCCAAAGTCTCTGATGGCGACGAACCGTTTCGTCTGTGAAATCTGCAATAAGGGTTTCCAGAGAGACCAGAACTTGCAACTTCACCGGCGCGGTCACAACCTTCCGTGGAAGCTCAAGCAAAGAAACAATAATGAAGTGATCAGGAAGAAGGTGTACGTGTGCCCTGAAAAGAGCTGCGTGCACCATGACCCTTCTCGAGCCCTTGGAGACCTCACGGGGATAAAGAAACACTACAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCAGTCCAATCAGATTGGAAGGCCCATAGCAAGATATGTGGGACTAGAGAGTACAAATGCGACTGTGGCACCATTTTCTCCAGGAAGGACAGCTTCATAACACATAGAGCATTCTGTGATGTCTTGGCTGAAGAAAGTGCCAGAATAACAGTTCCAGCGCCCTTTACGAGCTTCAGAACTGAGTTAATGAACGGAGCAAATCCTCCGGCGCCAAGAATCCCTCAGATTCTAGGTGGGTTTCATCCAGAATTTGGTGGGTCTGAACCGCTGGGGAATTTTTCTGACGCTAATGGGCAGAAGCTTAGGATGCCTTTATGGCTAGACCAGGCCAATTCCCAACTTAACCCACTCAGTGTTCCAAGCAATTCTGGTGCTTTCTCAGGAGCGACCCCTGCTTGTAGTTTGCCTGGTTTAGTGCAGAGAATGAATATGTTTGGTTCATCATCACAGCCACAGCCACAGACGCAGTGGCTGAACCGACACCCAGAAGCATCATATAATAATACCAGTGCCGACTTAATTGTGTCTGCACTGCCACATGGACTCAAGCAAgagcaagaagaaaacaaattaagcttTTCACATAGCGTGGGCACTTTGTTTTCCAGTAATGAGGCACAGGGAGGCCCAGCTCACATGTCAGCTACTGCACTCTTGCAGAAAGCAGCCCAAATGGGATCTACAAggagcaacaacaacaataacaacaacgACGTCACAGCCTTCAACTCCAACAACGTGATCTTTGGGTTGATGGGCCCAACTCTCTCAAATGCCAACAGATCAAGCAGTGTCGAGGCTGAGAATTTTTTCATGCAAACAAATCAAACTGATCAAAACTTGAACGAGTTGATGGTGAATTCCCAAGTAAGCAACAACCTTGGAGGTGGTGGGATTTTATTGAATGATTCCAACTCAAGCTCGTTTGTGAATGCTTCAAGGAAGAATTTGGATCATACGATAATGGCCACGAATGAAGGTCGAAGGCAAAACCGCGCAGCAATTGTGGGAAGGCATCCACGCTCCAGCTCAAATGAAGATGAGCTGAGTTTAACCAGAGACTTTCTAGGAGTAGGAAGTGATCACCCAATGAGTAGGCCATTCCTGCAGCAAGATCAGGCTAGCTTTAATGCAATTGGCTCGGCCATGGACCTGGGCAATTATGGTGGTCACCACTG 1658 0.4524 MMSQEKLSINPTIRGLVQDPISTSTSTSNSNPSSTSNPNSNPVVKRKRNLPGTPDPDSEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNNEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDVLAEESARITVPAPFTSFRTELMNGANPPAPRIPQILGGFHPEFGGSEPLGNFSDANGQKLRMPLWLDQANSQLNPLSVPSNSGAFSGATPACSLPGLVQRMNMFGSSSQPQPQTQWLNRHPEASYNNTSADLIVSALPHGLKQEQEENKLSFSHSVGTLFSSNEAQGGPAHMSATALLQKAAQMGSTRSNNNNNNNDVTAFNSNNVIFGLMGPTLSNANRSSSVEAENFFMQTNQTDQNLNELMVNSQVSNNLGGGGILLNDSNSSSFVNASRKNLDHTIMATNEGRRQNRAAIVGRHPRSSSNEDELSLTRDFLGVGSDHPMSRPFLQQDQASFNAIGSAMDLGNYGGHH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02423 552 Gene3D Classic Zinc Finger 70 97 - -
Bva07g02423 552 MobiDBLite consensus disorder prediction 1 46 - -
Bva07g02423 552 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 25 521 - -
Bva07g02423 552 MobiDBLite consensus disorder prediction 1 58 - -
Bva07g02423 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Bva07g02423 552 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
Bva07g02423 552 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Bva07g02423 552 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Bva07g02423 552 SMART c2h2final6 74 96 IPR013087 -
Bva07g02423 552 SMART c2h2final6 151 171 IPR013087 -
Bva07g02423 552 SMART c2h2final6 116 146 IPR013087 -
Bva07g02423 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 521 - -
Bva07g02423 552 Gene3D Classic Zinc Finger 108 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02423 Bva-Chr7 19587407 19590312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02423 44 386 IDZ Gene Family AT3G45260 54.839 4.56e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva07g02423 zf-C2H2 0.0057 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02423 K25870 - qsu:112038579 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00227 09 1158385 1160903 Bva07g02423 07 19587407 19590312 BWGD
Bva07g02423 07 19587407 19590312 Bva07g02423 07 19587407 19590312 ECH