Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02393 ATGAAGGAAGCTGAGAAGAGCTTGGATCCGCAACTATGGCACGCTTGCGCTGGAGGTATGGTTCAGATGCCTCCCGTGAACTCAAAAGTCTTCTACTTTCCTCAAGGCCACGTAGAACATGCACAGGCCAGCGTTGAATTTGTGGCCTCCTTAAGCTCGAGGGTTCCACCGCTCATTCTTTGCCGGGTGGCAGCCGTAAAATTCTTGGCAGACCCAGAAACTGACGAAGTTTATGCGAAGATAAGGTTATTCCCTTTAAGAAACTCTGAGATtgattatgatgatgatggggTTGTCGAGAGTAACGGATCTGAGAATTCTGATAAGCCCGCATCTTTTGCAAAGACATTAACCCAATCTGATGCCAACAATGGTGGAGGGTTCTCGGTTCCAAGGTACTGTGCTGAAACTATCTTTCCGCGGCTGGATTACTCAGCAGATCCACCAGTTCAGACTGTGATTGCCAAGGACGTTCATGGTGAAACTTGGAAATTTAGACATATTTACAGAGGAACACCTCGCAGGCACTTACTGACAACTGGGTGGAGCACTTTCGTGAACCAGAAGAAACTTGTTGCAGGGGATTCTATCGTGTTTTTGAGGGCCGAAAATGGAGATCTCTGTGTCGGAATTCGTCGAGCAAAGCGGGGAATTGGCAGCGGATCAGAGACCCTATCTGGGTGGAGCCCTGGTCCGGGGAATTGTGTTGGACCATATGGTGcgttttctgttttcttgaGAGAAGAGAACAAGGAATTGCGAAATGGTTCTGGCCTTGGGGGCAATTTGAGTGCAAGATCAAGAGTGAGGCCTGAATCTGTGATGGAAGCTGTGAGACTTGCTGCGAGTGGCCAGCCATTTGAACTTGTTTATTACCCAAGAGCAAACACTCCCGAGGTCTGCATTAAGGCTGCAGCTGTGAGGGCAGCAATGAGAATTCAGTGGTGCTCTGGAATGAGATTCAAGATGGCCTTTGAAACTGAGGATTCTTCCCGGATTAGCTGGTTCATGGGTACCATAGCTGCTGTTCAGGTTCTTGATCCTGTACGCTGGCCAAATTCTCCATGGCGACTTCTCCAGGTTACTTGGGATGAGCCAGATTTGCTACAAAATGTGAAGCGTGTTAGCCCATGGCTGGTTGAATTGGTATCAAACATGCCAATTATCCATCTATCACCCTTCTCTCCACAGAGGAAGAAGGCGCGGCTTCCACAGCATCCGCACCCAGACTTGTCCTTTGACGCTCACGTCCCAATACCAACGTTTTCAGGCAACCCCCTTGGACCAAGCAGTCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTTTCAGATCTCCACCGTAACAACAAACTGCACTTGGGGCTGCTTCCATCCAATGTTCAGCGGCAGTTCAATGTGCATTCTGGGATTTCTAATGTCAGTCTTATCAAGCATGAGACCAAAAATGAAAGCTTGTCATGCTTGCTCACTATGGGAAATTCTAATAAGACTTCGGAGAAATCTGATAACGTAAAGAGACAccagttttttctttttggtcaaCCAATACTTACTGAGCAACAAATCTCTCGAACCTGTTCTGTTGATGCATTTTCTCAGAATTACACTGGAAAAACTTCACCATATGAGGATAACAAAGCAAAGTGCTTTTTTGGTAATTCTGAATCTGCACTTTCGCAGCAGCTTTCGCCGGAGAAGTCTTCTGCTGAAATTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTCTTCATGGAATCAGAAGATGTGGGACGAACCCTAGACCTATCACGACTTAGTTCTTATGAAGAGTTATACAGGAGACTTGCCAACATGTTTGGAATTGAAAGCTCTGATATGTCGAACCATGTGCTCTACCGTGATGCAACAGGTGTTGTTAAGCAAACCGGAGAAGAACCATTCAgTGATTTCATGAAAACAGCAAAACGATTGACAATTCTGACTGATTCAGGCAGCAAAGATATTACAAGGACCTGGATTACTGGAACTCGGAACGGTGAACATGGATTAGATGCATCAAACAAGACTGGTCCCCTCAGCATATTCGCTTA 2117 0.4521 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHVEHAQASVEFVASLSSRVPPLILCRVAAVKFLADPETDEVYAKIRLFPLRNSEIDYDDDGVVESNGSENSDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGSGSETLSGWSPGPGNCVGPYGAFSVFLREENKELRNGSGLGGNLSARSRVRPESVMEAVRLAASGQPFELVYYPRANTPEVCIKAAAVRAAMRIQWCSGMRFKMAFETEDSSRISWFMGTIAAVQVLDPVRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPIIHLSPFSPQRKKARLPQHPHPDLSFDAHVPIPTFSGNPLGPSSPLCCLSDNAPAGIQGARHAQFGISLSDLHRNNKLHLGLLPSNVQRQFNVHSGISNVSLIKHETKNESLSCLLTMGNSNKTSEKSDNVKRHQFFLFGQPILTEQQISRTCSVDAFSQNYTGKTSPYEDNKAKCFFGNSESALSQQLSPEKSSAEISWQLGLDTGHCKVFMESEDVGRTLDLSRLSSYEELYRRLANMFGIESSDMSNHVLYRDATGVVKQTGEEPFSDFMKTAKRLTILTDSGSKDITRTWITGTRNGEHGLDASNKTGPLSIFA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02393 705 Gene3D - 111 215 IPR015300 -
Bva07g02393 705 Gene3D - 592 678 - -
Bva07g02393 705 ProSiteProfiles PB1 domain profile. 593 673 IPR000270 GO:0005515
Bva07g02393 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva07g02393 705 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Bva07g02393 705 SUPERFAMILY DNA-binding pseudobarrel domain 106 218 IPR015300 -
Bva07g02393 705 CDD B3_DNA 112 213 IPR003340 GO:0003677
Bva07g02393 705 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Bva07g02393 705 PANTHER AUXIN RESPONSE FACTOR 2 682 - -
Bva07g02393 705 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva07g02393 705 Gene3D - 315 387 - -
Bva07g02393 705 SMART B3_2 113 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02393 Bva-Chr7 19431631 19435142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02393 5 678 B3 DNA Binding Superfamily AT4G30080 59.091 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva07g02393 B3 5.6e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00255 09 1299444 1303059 Bva07g02393 07 19431631 19435142 BWGD
Bva07g02393 07 19431631 19435142 Bva07g02393 07 19431631 19435142 ECH
Bva09g00255 09 1299444 1303059 Bva07g02393 07 19431631 19435142 ECH
Bva04g02575 04 23053193 23056707 Bva07g02393 07 19431631 19435142 ECH
Bva13g01956 13 15746570 15755995 Bva07g02393 07 19431631 19435142 ECH