Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02354 ATGCAGCGATCTGGGTTTGGCCGTGATGGCATTTATAGATCTCTCAGACCTTCCATTGTGTTCCCCAAGGATCCCAACCTTTCCCTCGTTTCATTTCTCTTCAGAAACATTTCCTCCTACCCCAACAAACCCGCCTTGATTGATGCAGATTCCTGCGAAACTTTATCCTTCGCCCAGCTCAAATCCATTGTTATAAAGGTATCCCATGGCCTTCTCCATCTGGGTATCAAGAAAAATGACGTTGTCCTCTTGTTTGCACCCAATTCGATCCAGTTTCCTGTTTGCTTCTTCAGCATCGTTGCCATCGGCGCCATCGCCTCTACCGCCAACCCAATCTACACAGTCGCAGAGCTTTCCAAGCAGGTGAAAGattccaatcctaagcttgtgATAACTGTTCCTGAGTTGTGGGATAAGGTGAAGGACTTTAATCTCCCGGCGGTGATTTTGGGTTCCGAAAGCTCTTCCCTTGTTGCgttcaattcaaaaattacGACTTTCAATGGGTTGCTTGAGTTAGCTGGGTCCCCATCAGAATTTCCGGCTAGCCATGTTAAGCAGAGCGATACGGCGGCGCTTTTGTATTCCTCAGGCACAACGGGTGTCAGTAAAGGCGTAATTCTCACACATGGGAATTTCATTGCTTCAGGTCTTATGCTTACCTCGGATGACGAATTGATGGGTCGGATGCACGATGTGTTTATCTGCGTTTTGCCAATGTTTCATGTTTTTGGGTTGGCACTCATTACGTACGCGCAACTCCAGAGAGGCAATGCTTTAGTGTCTTTAAAGAAGTTCGACTTCGAAATGTTTTTAAAAGCAATTGAGAAGTATAGAGTGACTAACTTGTGGATTGTGCCGCCAATTATACTTGCTTTGGCAAAACATAGCGTGGTTAAGAAGTATAACCTTTCTTCTTTGAGGCAAATTGGTTCCGGTGCTGCTCCTCTGGGGAAAGAATTGATGCAGGAGTGTGCGAGGAATTTTCCTCATGTTGTGGTTATCCAGGGCTATGGTATGACGGAAACTTGTGGGATTGTTTCTGCGGAGAATCCAAGATTAGGAATTCGTCATAGTGGTTCAACCGGGCTGCTTGTTCCGGGAGTCGAAGCTCAAATAGTTAGCATGGATACAATGAAGCCCCTCCCCCCTGGTCAATTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGCTATTATAACAACCCACAGGCAACCAGATTGACTATTGACGGGAAAGGATGGGTACATACAGGAGATCTTGGATATTTTGACGAGGAGGGGCAACTTTTTGTTGTTGACCGTATTAAAGAACTCATCAAGTATAAAGGCTTTCAGGTTGCGCCGGCAGAACTTGAAGGACTTCTTGTTTCTCACCCTGAAATACTAGATGCTGTTGTCATCCCATATCCTGACGCTGAAGCAGGTGAGGTCCCAGTTGCATATGTTGTTCGTACACCCAACAGTTCACTAACTGAAGAAGATGTTCAGAAGTTGATTGCTAATCAGGTTGCACCTTTCAAAAGATTGCGGAGGGTGACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAAATTCTGAGAAGAGAGCTTATTGCCCAAGCAAGATCGAAAATATG 1628 0.4466 MQRSGFGRDGIYRSLRPSIVFPKDPNLSLVSFLFRNISSYPNKPALIDADSCETLSFAQLKSIVIKVSHGLLHLGIKKNDVVLLFAPNSIQFPVCFFSIVAIGAIASTANPIYTVAELSKQVKDSNPKLVITVPELWDKVKDFNLPAVILGSESSSLVAFNSKITTFNGLLELAGSPSEFPASHVKQSDTAALLYSSGTTGVSKGVILTHGNFIASGLMLTSDDELMGRMHDVFICVLPMFHVFGLALITYAQLQRGNALVSLKKFDFEMFLKAIEKYRVTNLWIVPPIILALAKHSVVKKYNLSSLRQIGSGAAPLGKELMQECARNFPHVVVIQGYGMTETCGIVSAENPRLGIRHSGSTGLLVPGVEAQIVSMDTMKPLPPGQLGEIWVRGPNMMQGYYNNPQATRLTIDGKGWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRTPNSSLTEEDVQKLIANQVAPFKRLRRVTFINSVPKTASGKILRRELIAQARSKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02354 542 CDD 4CL 21 534 - -
Bva07g02354 542 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Bva07g02354 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 541 - -
Bva07g02354 542 SUPERFAMILY Acetyl-CoA synthetase-like 18 540 - -
Bva07g02354 542 Gene3D - 440 541 IPR045851 -
Bva07g02354 542 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Bva07g02354 542 Gene3D - 9 439 IPR042099 -
Bva07g02354 542 Pfam AMP-binding enzyme 35 444 IPR000873 -
Bva07g02354 542 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02354 Bva-Chr7 19208665 19212393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02354 1 542 Monolignol Biosynthesis Gene Families AT4G05160 69.301 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02354 K01904 - rcu:8275217 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00288 09 1502965 1506530 Bva07g02354 07 19208665 19212393 BWGD
Bva07g02354 07 19208665 19212393 Bva07g02354 07 19208665 19212393 ECH