Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02352 ATGGGAAGAGCTCCTTGCTGTGACAAGGCGAACGTGAAAAGAGGGCCATGGTCACCAGAAGAAGACTCAAAGCTCAAAGAGTACATAGAGAAGCATGGCAGTGGAGGGAATTGGATTGCTCTTCCCCAGAAAGCCGGTCTTAGGAGGTGTGGAAAAAGTTGCAGACTGAGATGGCTTAACTATTTGAGGCCCAACATTAAGCATGGAGAATTCTCTGATGAGGAAGACAGAATAATTTGCAACCTCTTTGCTAATATTGGAAGCAGGTGGTCAATTATCGCTGCTCAGCTGCCAGGCAGGACCGACAATGACATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAGCTGATGGGGTTGCTTCCTCCATCTCACAGAAAACCTCCATTTCCATCTTCTCTTCAGAACACTCAGTCATTTCCTTCTTCTCAATCACTGTCATCTTCAATGTACAGATCAGACTGCAGTTCTTACTATAGCCCTGAAACTGTAGCTTTCACTGGGCTGGAACCCATTTCTGCCCCTTCAAGTTATGCTAGCACAAGCTGCACAACATCCCATTTGGCCACCACgaattttcccttttcccAGAACCAAGAGTCCTTTATTTCTCCCATGCAATATTACCCTGTGAGGGGTAGTCTTCTCATGTTTGGAAGTGAAGGAAGTTGCAGTTCGTCTGATGGGAGCTGCAGTCAGATCAACCATGCCCGAGAGattaaacaagaagaaatgggCTTCCAGAATTGTATGTGCAGTGGGTTTGAAGATAGCAATAGGTTCATGTTTAGTTATGGAAGCAACAATGGAGGTGAAAATATTAACCAATTGGCTGAAAAGCCTGATGGATGTTTAGGGGAAAGCATTTTGGATTATGGGCTTGAGGATATTAAGCAGCTGATTAGTAGCACTAGTAATAATGGGTTATTTAACATTGATGAAAACAAGACACACGAGAAGGTGATGTACTACTACTG 977 0.4258 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGSGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICNLFANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPPSHRKPPFPSSLQNTQSFPSSQSLSSSMYRSDCSSYYSPETVAFTGLEPISAPSSYASTSCTTSHLATTNFPFSQNQESFISPMQYYPVRGSLLMFGSEGSCSSSDGSCSQINHAREIKQEEMGFQNCMCSGFEDSNRFMFSYGSNNGGENINQLAEKPDGCLGESILDYGLEDIKQLISSTSNNGLFNIDENKTHEKVMYYY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02352 325 PANTHER TRANSCRIPTION FACTOR RAX3 1 308 - -
Bva07g02352 325 Gene3D - 70 139 - -
Bva07g02352 325 SMART sant 67 115 IPR001005 -
Bva07g02352 325 SMART sant 13 64 IPR001005 -
Bva07g02352 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva07g02352 325 CDD SANT 16 62 IPR001005 -
Bva07g02352 325 MobiDBLite consensus disorder prediction 130 148 - -
Bva07g02352 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva07g02352 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva07g02352 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva07g02352 325 Gene3D - 7 68 - -
Bva07g02352 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva07g02352 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva07g02352 325 PANTHER OS09G0431300 PROTEIN 1 308 - -
Bva07g02352 325 MobiDBLite consensus disorder prediction 128 148 - -
Bva07g02352 325 CDD SANT 70 111 IPR001005 -
Bva07g02352 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02352 Bva-Chr7 19196132 19197978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02352 1 119 MYB Transcription Factor Family AT5G57620 86.555 5.88e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva07g02352 Myb_DNA-binding 8.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00290 09 1513174 1514798 Bva07g02352 07 19196132 19197978 BWGD
Bva07g02352 07 19196132 19197978 Bva07g02352 07 19196132 19197978 ECH