Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02339 ATGGAAGCTTGCACTGCCAATGGCACTGATGAATTTGTTGGGTCGTCTGCGAATATTGACGATGCCGCGCAGATCCTGGTCAAAGGCAAGCGCACCAAGCGGCAGAGGCCTTTGTCGCCTTCTACTCCTTCTGCTCTTGCGGTGGCCGCCAATACCATCGTCAGTACTTCTAGCTCCTCCAGTGCTTCCGAGGAGGACCGTACTCGTGTTATCGGTGGCGGCGACTCTGGTTCCTTTTCGTCTACCCCAACCACCAACCACGGCACcgaggaagaagaagacatgGCTAACTGTTTGATTCTCTTGGCTCGAGGTGACGCTCCTCATCCGCATCAACTTCAACAAAGGGGTACCGGTTGCAACGGCGGCCGAATTAGATTTGGTGAGATGGCCACCGCCAAAATGGGTTTCTATATCTATGAGTGCAAAACGTGTAACCGGACATTCCCTTCGTTTCAAGCGCTGGGTGGCCACAGGGCAAGCCACAAAAAGCCCAAGGtatcttctctttctccttatCCTTCtccagaagaaaagaaaccacCACCGTTAACGTTACCCcgacaaaataattatgatttccAAGAAGCAGCACATGAGCAATCGCCCTTAACCCATACCAAAACCGGGCCTCCTCAGATTCCCCTTCATCCATTGCCCAGTAATAGATCGGGTTTCAAGGCGCCCAAGATTCACGAGTGCTCCATATGTGGGTCAGAATTCACGTCTGGACAAGCATTGGGCGGGCACATGAGGCGGCATAGGGCATCCGCAAGAACTAGTTCTGATCAGGTAGCGGCAAGTTGTGACACCTCCACCGCCGTTAACATTCAAGTTAAGCCCGGGAATATTCTAGAATTGGATCTTAACCTGCCGGCACCGGAAGACGATCTCCGGGAGTCCAAGTTTGAGTTTACAGCAACACAAAAAGCTTTGGTGCTGTCCGCTCCGACTTTGGTGGATTGCCATTATTA 974 0.4846 MEACTANGTDEFVGSSANIDDAAQILVKGKRTKRQRPLSPSTPSALAVAANTIVSTSSSSSASEEDRTRVIGGGDSGSFSSTPTTNHGTEEEEDMANCLILLARGDAPHPHQLQQRGTGCNGGRIRFGEMATAKMGFYIYECKTCNRTFPSFQALGGHRASHKKPKVSSLSPYPSPEEKKPPPLTLPRQNNYDFQEAAHEQSPLTHTKTGPPQIPLHPLPSNRSGFKAPKIHECSICGSEFTSGQALGGHMRRHRASARTSSDQVAASCDTSTAVNIQVKPGNILELDLNLPAPEDDLRESKFEFTATQKALVLSAPTLVDCHY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02339 324 PANTHER ZINC FINGER PROTEIN ZAT5 16 324 - -
Bva07g02339 324 SUPERFAMILY beta-beta-alpha zinc fingers 139 254 IPR036236 -
Bva07g02339 324 SMART c2h2final6 232 254 IPR013087 -
Bva07g02339 324 SMART c2h2final6 140 162 IPR013087 -
Bva07g02339 324 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Bva07g02339 324 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 16 324 - -
Bva07g02339 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Bva07g02339 324 MobiDBLite consensus disorder prediction 156 220 - -
Bva07g02339 324 Pfam C2H2-type zinc finger 140 165 - -
Bva07g02339 324 Pfam C2H2-type zinc finger 232 256 - -
Bva07g02339 324 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Bva07g02339 324 MobiDBLite consensus disorder prediction 55 92 - -
Bva07g02339 324 MobiDBLite consensus disorder prediction 188 209 - -
Bva07g02339 324 Gene3D Classic Zinc Finger 138 254 - -
Bva07g02339 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02339 Bva-Chr7 19124700 19125987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02339 8 324 C2H2 Transcription Factor Family AT2G28200 46.526 8.22e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva07g02339 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02339 - - dzi:111285660 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00307 09 1600802 1602548 Bva07g02339 07 19124700 19125987 BWGD
Bva07g02339 07 19124700 19125987 Bva07g02339 07 19124700 19125987 ECH
Bva07g02339 07 19124700 19125987 Bva03g02233 03 19492628 19494113 ECH
Bva07g02339 07 19124700 19125987 Bva09g00307 09 1600802 1602548 ECH
Bva09g00307 09 1600802 1602548 Bva07g02339 07 19124700 19125987 ECH
Bva04g02524 04 22782216 22783252 Bva07g02339 07 19124700 19125987 ECH
Bva13g02018 13 16131958 16132975 Bva07g02339 07 19124700 19125987 ECH