Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02338 ATGAATTCAAGAGCAACATCTGGTTTTCCAAATGTTCCTCGAGGGATGCAGATATTTGGTGCAGATGAAGATTtgatttcatcttcttttgaaGTAAACTCTGGCTCAGATTCACACTCTAGCTCCCTCCTCTTCAATCTCTCTTTGCTCAAAGACAGGATTAGTGAGGTGCAGACCTTGGTTGGTGTTCTTATCTCCCAAGATCAGAATCCACCCGAGTCAACTTCCATGGCTGTAGCCAGCATCAACTCTGTAATGCAAGACATCATAGTCACAGCCTCTTCCATGATGTTCATTTGCCAACAAATGTCTCTTGGTTCCCCTCCTCCAGGTACTACCACTAATTGCACTCGTGAATTGTACCAACAGCACCAATCCCATGATAGGTTTCCTCAATCAAACTTTGCCAATAATTGTCGACAAGTTACCAACATAGGCCAAGATAGAGGGCAGAGTTTCTTTTCTAGTACTCAAACCTTGGACTGGTTTGGCGAAAGCTATAATAATACTGACTGTAATCTTAAGGATGATGGTCCAAGCGTGGCAATCAGTGAAACTAATAATAGTAGGGGAGAATTATCTTTAAGGGATAGCGGTCAACCAAATGAAGGGTTGAATGGGCTTTCGCCAAACAACTGTGATATTATTGAATTGGATGCTGCAGATTTGTTGGCTAAATACACACATTATTGCCAAGTTTGTGGGAAAGGGTTTAAGCGCGATGCTAATTTGAGGATGCACATGAGAGCTCATGGAGATGAGTACAAAACCACTGCTGCCTTGAGCAACCCATTGAAGAATAAGATGAACTTGGGTGAAGACAAAGAGTGTTTGGAAAGTACAAAGCCTAAGAAATATTCATGCCCACAAGAAGGGTGCAGGTGGAACAGAAAGCATGCCAAGTTCCAGCCTTTGAAATCTATGATTTGTGTGAAGAATCACTACAAGAGAAGCCATTGCCCTAAAATGTACGTGTGCAAGAGGTGcaaccaaaagaaattctCTGTGCTTTCTGATCTGAGGACTCATGAGAAGCACTGCGGGGATCTCAAGTGGCAGTGCTCCTGTGGCACCACATTTTCCAGGAAAGATAAGCTTATGGGACACGTTACTTTGTTCGTTGGCCACACTCCAGTTCTCAAtggcttttcattttctgggaaata 1166 0.4125 MNSRATSGFPNVPRGMQIFGADEDLISSSFEVNSGSDSHSSSLLFNLSLLKDRISEVQTLVGVLISQDQNPPESTSMAVASINSVMQDIIVTASSMMFICQQMSLGSPPPGTTTNCTRELYQQHQSHDRFPQSNFANNCRQVTNIGQDRGQSFFSSTQTLDWFGESYNNTDCNLKDDGPSVAISETNNSRGELSLRDSGQPNEGLNGLSPNNCDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALSNPLKNKMNLGEDKECLESTKPKKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNQKKFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVTLFVGHTPVLNGFSFSGK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02338 388 Gene3D Classic Zinc Finger 322 372 - -
Bva07g02338 388 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 382 IPR044300 GO:0010044|GO:0010447
Bva07g02338 388 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Bva07g02338 388 SMART c2h2final6 286 319 IPR013087 -
Bva07g02338 388 SMART c2h2final6 324 346 IPR013087 -
Bva07g02338 388 SMART c2h2final6 229 251 IPR013087 -
Bva07g02338 388 MobiDBLite consensus disorder prediction 186 207 - -
Bva07g02338 388 Gene3D Classic Zinc Finger 227 307 - -
Bva07g02338 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Bva07g02338 388 PANTHER OS08G0562300 PROTEIN 17 382 - -
Bva07g02338 388 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02338 Bva-Chr7 19119896 19121062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02338 37 379 C2H2 Transcription Factor Family AT5G22890 49.857 3.18e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva07g02338 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02338 - - gmx:100802769 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00309 09 1608701 1609885 Bva07g02338 07 19119896 19121062 BWGD
Bva07g02338 07 19119896 19121062 Bva07g02338 07 19119896 19121062 ECH