Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02333 ATGGCGAACGGTATGGGTCCGGAAAAGTTCTTAGTGCTATCTCGGATCCGGACGGGTCTGAAGAGGGAGTTTGCATTCGCCATGAAGGCTCAGTCCGAGATATGTGGATCTTTGGGTCGGACCCGAGCCAGCAAGAACCGAAATGAGGCTCAAGAAAGTCCAAGCAGTAAAAGGTCGAAGAAGTCCGGTTCGTCGAAGGCTGAGAGAGACAAGGAGAAAAAACAGAATCCGGTTCATGTTGTACAGTTAAAGAATTCCGACGGGGTGAAGGTCGAGAAGGTGAAGTTTGACGAGGATGTCGGTGATGCAATGAGCGAGGAGGAGGCAAAAAGTGACGTGGTAGATCTTGGGAGCGAAGACGAACCCAAGAATCAAATGGGAGAATCGACTGGCAAGAGGGAGCTAGAGAATGAAGCATCGATGCCCATTTGTGAAGAGGAACCTAAGAGCGACGTGGTAGAAACTGTGAGCGACGATGAGCCCAAAAGTGGTCATATGCTAGAATCTTCCAAGGAGGAGGTAATGGATGAAATGGCGCAACCCATTTGTGAAAATGTGGGCAAGGAGGaacaaacaaatgaaacaGATGTGCATAAGTCGTTAATGAACGAAACCGTTAAGAAGGAAGATATGGAGATATGTCCTCCAATGGAAGAAGATATTAGTGGGTTAAACCCAATTTCTGTGAACGATGATTATAAGGTGAAGGACATGTCAATGGAGAAGCCACTAAGGAGGTTTACACGGTGGGCACTGAAACAAAAAGTGAATGACACGACGGTAAAAAACGATGGGGGATATGCATGCGCCAAACCAATTGGAATCAGTGATAATGTTAAAAGGGAAAGCGAGGGCAGTTCATTATTCACCACTCCAACTCAAGTAAAAATGTCGAGGACTAGCTTGAAGAAGTTCCCTTCGAAGCTTAAGGACCTTCTAGCCACAGGGATTCTTGAAGGAGTACCTGTGAAGTATGTCCGGGGCTTGAAGGCACGAAGGCCTGGAGAAGCAGGGCTCCAAGGATTGATTAGAGGCGCCGGGATTGTTTGCTATTGCGAAGTTTGTAACGGAGTTGAAGTAGTCACACCCACTGTGTTTGAGTTGCATGCTGGTAGTGCAAACAAACGCCCCCCAGAGTATATTTTCCTTGAGAGTGGGAACACTCTTCGTGATATCATGAATATGTGTTTGAATCTTCCATTGGACACGTTGGAGAACGCTATCCAAAATGCTCTTGGTGGATTCCCTATGAAGAAATCTGCCCTCTGTTTGAATTGCAGAGTGTGTATTTCTGAAGCTAGCAAGGGATTGTCAAAAGTACTTTGTGATTCATGCATCGAGTTAAAAGAGTCTCAACCTAGCCCCATGGCTGGTTTGGTCACCCAAACAGCTGAGACTAGCAATAACTCTGTTTCATTAGCAGCTAATCCCGGATCTCCTGAACCTGTTTTGGCTCCAAAGTTATTGAAAAGTGGCATGAAGCACAGCACTTCTCAGGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTACGTTTGCATAAATTGGTCTTTGAGGAAGATGTGTTGCCGGATGGAACTGAAGTGGCCTACTATACCCGTGGACAGAAATTGTTGGTTGGTTATAAAAAGGGATTTGGAATTATTTGTTGCTGTTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGGCATCCAGACGCAAGCCTTACTTGCACATATACACATCCAATGGAGTCTCTCTCCATGAGTTGTCTATCTCCTTATCAAGAGGTAGGAGGTTTTCTGCCTATGAAAATGATGACCTCTGTAGTATATGTTCAGATGGAGGAGATCTGCTATGCTGTGAAGGATGCCCACGGGCTTTTCACATAGATTGTGTTCCCTTGGCAGGCATTCCTACTGGTACTTGGTACTGTAAATATTGCCAGAATCTTTTCCAGAAGGACAAATATGTGGAGCATAATGTCAATGCTGTGGCAGCTGGAAGGATTGCAGGCATTGATCCTTTAGAACAGATAAACCAGAGGTGCATTCGTATTGTCAATAATCCAAAGGATCAGGGTGGATGTTCGTTGTGCAGCAGAAGCCATGCTTTTAGTAAAAACTTTGGTCCTGGCACAGTGATTATTTGTGATCAGTGTGAAAGAGAATATCATGTTGGGTGTTTGAAGGATCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAACTGGTTCTGCTGCACAGAATGCGATCAAATTTATTCTACTCTTTTGAATTTGGTGGCTTGTGGAGAAGCAGATCTCCCTGATTCCCTTCTGAGCATGATTAAAAAGAAgtatgaagaaaaaagtttagagACGGGTGATCTTGATATAAAATGGAGAATCCTGAATTGGAAGCTGGCTTCTGATGTTGAAACAAGGAAATTGCTCTCAAAGGCTTGTTCCATCTTCCAtGAGCGGTTTGATCCTATTGTTGATGATGCTTCTGGCCGTGACTTTATTCCAATGATGCTTTATGGTAGGAACATCAGGGGTCAAGATTTCGGTGGGATGTACTGTGCGGTACTCACTGTCAACCAATTGGTTGTGTCGGCTGGATTATTTCGTATATTTGGACAGGAAGTGGCTGAACTTCCGTTAGTGGCAACAACTACAGATTGCCAAGGACagGGTTACTTCCAATCCTTGTTCTCTTGCATTGAGACATTGCTTGGGTCTTTAAAAGTGGGTCACCTTGTCCTACCGGCTGCCGATGAAGCTGAATCAATTTGGACCAATAAATTTGGATTTGCCAAGTTAGAGCAAGACCAGATAAacaattataagaaatattatcaGATGATGATTTTCCAAGGGACATCAGTGCTACGGAAaaataataatgaatttacAGCTCCCCGCTCCCTCTTTTATTTACGCTTGTCGCGGTTCCCTTCTCCATCCCAATTCGCTCTGCCAAGTCTCAAACGCCTCATCATTCTCTCTTTCGCTCTGAGTCTCAGGTG 3008 0.4398 MANGMGPEKFLVLSRIRTGLKREFAFAMKAQSEICGSLGRTRASKNRNEAQESPSSKRSKKSGSSKAERDKEKKQNPVHVVQLKNSDGVKVEKVKFDEDVGDAMSEEEAKSDVVDLGSEDEPKNQMGESTGKRELENEASMPICEEEPKSDVVETVSDDEPKSGHMLESSKEEVMDEMAQPICENVGKEEQTNETDVHKSLMNETVKKEDMEICPPMEEDISGLNPISVNDDYKVKDMSMEKPLRRFTRWALKQKVNDTTVKNDGGYACAKPIGISDNVKRESEGSSLFTTPTQVKMSRTSLKKFPSKLKDLLATGILEGVPVKYVRGLKARRPGEAGLQGLIRGAGIVCYCEVCNGVEVVTPTVFELHAGSANKRPPEYIFLESGNTLRDIMNMCLNLPLDTLENAIQNALGGFPMKKSALCLNCRVCISEASKGLSKVLCDSCIELKESQPSPMAGLVTQTAETSNNSVSLAANPGSPEPVLAPKLLKSGMKHSTSQGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYTRGQKLLVGYKKGFGIICCCCNSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSRGRRFSAYENDDLCSICSDGGDLLCCEGCPRAFHIDCVPLAGIPTGTWYCKYCQNLFQKDKYVEHNVNAVAAGRIAGIDPLEQINQRCIRIVNNPKDQGGCSLCSRSHAFSKNFGPGTVIICDQCEREYHVGCLKDHNMQNLEELPEGNWFCCTECDQIYSTLLNLVACGEADLPDSLLSMIKKKYEEKSLETGDLDIKWRILNWKLASDVETRKLLSKACSIFHERFDPIVDDASGRDFIPMMLYGRNIRGQDFGGMYCAVLTVNQLVVSAGLFRIFGQEVAELPLVATTTDCQGQGYFQSLFSCIETLLGSLKVGHLVLPAADEAESIWTNKFGFAKLEQDQINNYKKYYQMMIFQGTSVLRKNNNEFTAPRSLFYLRLSRFPSPSQFALPSLKRLIILSFALSLR 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02333 1002 ProSitePatterns Zinc finger PHD-type signature. 608 647 IPR019786 -
Bva07g02333 1002 MobiDBLite consensus disorder prediction 35 171 - -
Bva07g02333 1002 SUPERFAMILY FYVE/PHD zinc finger 692 748 IPR011011 -
Bva07g02333 1002 SMART PHD_3 607 648 IPR001965 -
Bva07g02333 1002 SMART PHD_3 694 751 IPR001965 -
Bva07g02333 1002 ProSiteProfiles Zinc finger PHD-type profile. 605 650 IPR019787 -
Bva07g02333 1002 Pfam PHD-finger 608 649 IPR019787 -
Bva07g02333 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 671 IPR013083 -
Bva07g02333 1002 Gene3D - 791 959 - -
Bva07g02333 1002 MobiDBLite consensus disorder prediction 86 171 - -
Bva07g02333 1002 Pfam Tify domain binding domain 341 396 IPR032308 -
Bva07g02333 1002 Pfam Tify domain binding domain 541 589 IPR032308 -
Bva07g02333 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 753 IPR013083 -
Bva07g02333 1002 ProSiteProfiles Zinc finger PHD-type profile. 692 753 IPR019787 -
Bva07g02333 1002 SUPERFAMILY FYVE/PHD zinc finger 598 650 IPR011011 -
Bva07g02333 1002 CDD PHD1_AIRE 607 647 - -
Bva07g02333 1002 PANTHER AUTOIMMUNE REGULATOR 1 959 - -
Bva07g02333 1002 MobiDBLite consensus disorder prediction 45 78 - -
Bva07g02333 1002 PANTHER AUTOIMMUNE REGULATOR 1 959 - -
Bva07g02333 1002 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 850 938 IPR016181 -
Bva07g02333 1002 ProSitePatterns Zinc finger PHD-type signature. 695 750 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02333 Bva-Chr7 19103998 19110848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02333 302 959 PHD Transcription Factor Family AT2G36720 45.619 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva07g02333 TDBD 4.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02333 - - jre:109008790 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00313 09 1620835 1627625 Bva07g02333 07 19103998 19110848 BWGD
Bva07g02333 07 19103998 19110848 Bva07g02333 07 19103998 19110848 ECH