Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02303 ATGGAGTTCTGGGGTGTTGAGGTCAAGAGTGGGCAGACTGTTAAAGTCGATCCTGAGGAATTTGATGCATACATACACCTTTCACAGGCTGCTTTGGGGGAATCTAAGAAAGATAGTGGAAGCGAGGCTGTGGTTCTTCATTTGAAAACTGATAACCAGAAGCTTGTTTTGGGAACTCTTTCTAGGGAAAAATTTCCTCAGCTATCTTTTGATATTGTTCTTGATAAGGAATTTGAGCTCTCTCACAATTGGAAAAATGGGAGTGTCTATTTCTGTGGATACAAAGCGGAAATGCCAGATGACGAGGTTGACTTTGATGATGAGAGCAATGATGACGAGGATCTCCCTGTGATCTCCAATGACAATGGAAAAACTGAGACTAAGACTGAAGAAGTTAAGAATGGTACTCTTAAAAAACCTGCTGCCAAGGGTCCTCCAGCGAATCAAGTAAATGCTCTTTCAAAGAAGGATGAAGAGGAGGACtctgaagatgatgatgatgattctgatgaagaagatgatgaagctGGAAGTTCAGATGAgGATATGATGGATGCTGATAGTGATAGTGATGACGGTGAGagtgatgaagatgatgaggAGACGCCTCCTAAGAAGGGTAAGAAGAGACCTAATGATTCAGCATCAAAAACTCCTATTCCTTTGAAGAAAGCTAAATCTGCCACTCCACAAAAGACTGATAGCAAAAAAGGTGGTCATACAGCCACTCCTCACCCTAAGAAGGATATAAAGACTCCCAACAGTGACTCTAAGTCTGGTGGACAATTCTCATGCAAATCCTGCAGCAAgTCTTTCAACTCTGAAGGTGGTCTGCAGCAACATTCAAAGGCTAAGCACGGTTG 863 0.394 MEFWGVEVKSGQTVKVDPEEFDAYIHLSQAALGESKKDSGSEAVVLHLKTDNQKLVLGTLSREKFPQLSFDIVLDKEFELSHNWKNGSVYFCGYKAEMPDDEVDFDDESNDDEDLPVISNDNGKTETKTEEVKNGTLKKPAAKGPPANQVNALSKKDEEEDSEDDDDDSDEEDDEAGSSDEDMMDADSDSDDGESDEDDEETPPKKGKKRPNDSASKTPIPLKKAKSATPQKTDSKKGGHTATPHPKKDIKTPNSDSKSGGQFSCKSCSKSFNSEGGLQQHSKAKHG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02303 287 MobiDBLite consensus disorder prediction 102 287 - -
Bva07g02303 287 MobiDBLite consensus disorder prediction 229 254 - -
Bva07g02303 287 SUPERFAMILY Nucleoplasmin-like core domain 3 93 IPR036824 -
Bva07g02303 287 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Bva07g02303 287 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 284 - -
Bva07g02303 287 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Bva07g02303 287 Gene3D Classic Zinc Finger 251 286 - -
Bva07g02303 287 SMART c2h2final6 263 286 IPR013087 -
Bva07g02303 287 SUPERFAMILY beta-beta-alpha zinc fingers 254 285 IPR036236 -
Bva07g02303 287 MobiDBLite consensus disorder prediction 158 199 - -
Bva07g02303 287 Gene3D Nucleoplasmin core domain 1 101 - -
Bva07g02303 287 MobiDBLite consensus disorder prediction 255 280 - -
Bva07g02303 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 287 IPR013087 -
Bva07g02303 287 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02303 Bva-Chr7 18922215 18925050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02303 1 95 C2H2 Transcription Factor Family AT3G44750 65.263 8.55e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva07g02303 NPL 2.6e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02303 - - lang:109358867 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00343 09 1790647 1795278 Bva07g02303 07 18922215 18925050 BWGD
Bva07g02303 07 18922215 18925050 Bva07g02303 07 18922215 18925050 ECH