Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02271 ATGTACAGTAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCTGTGCAGGAAGACAATGCTGGGAATTACGCAAAAGCGTTTCCTTTGTATATGAATGCTTTGGAGTACTTTAAGACCCATTTGAAGTACGAGAAAAACCCTAAGATAAAAGAAGCGATCACCCAGAAATTCACCGAGTATCTGCGGCGGGCGGAGGAGATCCGAGCTGTTTTTGATGACGGAGGGCCTGGCCCAGCTTCCAATGGGGATGCTGCAGTAGCTACACGGCCCAAGACGAAGCCTAAGGATGGTGAAGGAGATGGGGAGGACCCCGAGCAGGCAAAGCTCAGGGCTGGTCTCAATTCAGCCATTATTCGGGAGAAACCGAATGTCAAGTGGAACGACGTTGCTGGGTTAGAAAGCGCCAAGCAAGCCTTGCAGGAGGCAGTCATTCTTCCGGTGAAGTTCCCACAGTTCTTTACTGGTAAAAGACGACCCTGGAGAGCTTTTCTCTTGTACGGGCCACCCGGAACGGGGAAATCGTATTTGGCCAAGGCTGTTGCAACGGAAGCTGAATCCACTTTTTTCagTGTTTCATCATCGGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGTTGGTGTCAAACCTCTTTGAAATGGCTCGGGAAAGTGCCccttccattatttttatcGATGAAATAGATTCCCTATGCGGTCAGCGAGGAGAAGGCAATGAAAGTGAAGCTTCAAGACGAATCAAGACTGAGCTTCTAGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCCTATGCTCTAGATCAGGCAATAAGGAGGCGTTTTGATAAGCGTATATACATTCCTCTGCCAGATTTGAAGGCTCGACAACACATGTTCAAGGTGCATTTAGGAGATACTCCTCATAACTTAACAGAAAGTGATTTTGAACACTTGGCTCGAAGGACAAAGGGGTTTTCAGGTTCAGACATATCTGTCTGTGTTAAGGATGTTTTATTTGAGCCTGTTCGCAAAACCCAAGATGCcatgtttttctttaagaaTTCTGAGGGAATGTGGATCCCGTGTGGACCAAAGCAACAAGGTACGGTGCAAACCACAATGCAGGAGCTTGCTGCAAAAGGACTTGCTTATAAGATCCAACCACCACCAATTTCTAGAACAGATTTTGATAAGGTGCTTGCTAGACAAAGGCCTACAGTAAGCAAAGCTGACCTTGATGTTCACGAGAGATTCACGAAGGAGTTTGGAGAGGAAGGTTG 1298 0.4545 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVFDDGGPGPASNGDAAVATRPKTKPKDGEGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARRTKGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNSEGMWIPCGPKQQGTVQTTMQELAAKGLAYKIQPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02271 432 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Bva07g02271 432 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Bva07g02271 432 Gene3D - 124 420 IPR027417 -
Bva07g02271 432 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Bva07g02271 432 PANTHER AAA DOMAIN-CONTAINING 1 432 - -
Bva07g02271 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 428 IPR027417 -
Bva07g02271 432 Pfam Vps4 C terminal oligomerisation domain 365 429 IPR015415 -
Bva07g02271 432 CDD AAA 132 295 - -
Bva07g02271 432 MobiDBLite consensus disorder prediction 73 108 - -
Bva07g02271 432 SMART smart 2 79 IPR007330 -
Bva07g02271 432 MobiDBLite consensus disorder prediction 91 108 - -
Bva07g02271 432 SUPERFAMILY MIT domain 2 81 IPR036181 -
Bva07g02271 432 SMART AAA_5 161 297 IPR003593 -
Bva07g02271 432 Gene3D - 297 412 - -
Bva07g02271 432 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 432 - -
Bva07g02271 432 CDD MIT_VPS4 4 77 IPR045253 -
Bva07g02271 432 Gene3D - 6 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02271 Bva-Chr7 18745802 18750047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02271 160 353 Calmodulin-binding Proteins AT3G56690 37.245 1.84e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02271 K12196 - gmx:100788150 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00376 09 2026005 2029790 Bva07g02271 07 18745802 18750047 BWGD
Bva07g02271 07 18745802 18750047 Bva07g02271 07 18745802 18750047 ECH
Bva09g00376 09 2026005 2029790 Bva07g02271 07 18745802 18750047 ECH