Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02249 ATGCCCCGGGGAAAGGAAAATTCTTCATCAGTCGCTAAGCCAAATGAACCTGAAAAGCCAACTGAATCAGATGAGAAGATTGATCTTGATGAAACAAATGATCCTGAGGAAGCAATGGACGAAGAAATTGAATATGAAGAAGTagaggaggaagaggaagtGGAAGAGATAGAAGAAGAGGTGGAAGAGGAGGAGGAtccagaggaagaagaggaggatCCAGAAGATGAAGAGGTGGAGGAAGTGGAAGAAGATGATGCTAGTCATGCCATGCAAAACATGAGCAATGATGAGGGTACAAAGGTGGAAGATGATGAGCAGAAGAAACATGCTgaacttctttctcttcctcctcaTGGCTCTGAAGTATACGTTGGTGGCATTCCTCACGATGCATCAACAGAAGACTTGAGGGCATTTTGTGAGCCTATTGGGGAAGTTGTAGAGGTTCGAGTTATGAAAGGAAAAGACTCTGGTGAGAACAAGGGCTTTGGTTTTGTGGCTTTTAGAAATGTGGAATTGGCTTCTAAAGCTATTGATGAACTgaataataaagaatttaagggtaaaaaagtaaaatgttcAACTTCTCAAGCAAAACACCGTCTTTTCATTGGTAATGTTCCTAGAAGTTGGGGTGAGGAAGATCTGCGGAAGGTTGTAACTGAAATTGGGCCTGGAATTACTGCTGTAGAACTAGTCAAGGATATGAAGAACACAAACAATAACCGTGGTTTTGCTTTCATTGATTATTACAATCATGCATGTGCCGAGTATTCAAGGCAAAAGATGATGAACCCAAAATTTAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCAAAAAATGCTGATTCCTCTGCTGCATCACAGGTGAAGGCAGTATACGTGAAGAACTTACCTAAGAATATAACTCAAGACCAGTTAAAGAAGCTTTTTGAACACCACGGGAAGATCACAAAGGTGGTTCTGCCACCAGCAAAGTCTGGACAGGAAAGGAACAGGATTGGTTTTGTACATTTTGCAGAGAGATCGAGTGCTATGAAAGCACTAAAAAATACCGAAAGATATGAATTAGAAGGTCAAGTTTTGGAATGCTCTCTAGCAAAACCACAGGCTGATCAGAAGTCTGCAGGATCAAATACACAGAAACCAGGATTGCTTCCAAGCTATCCTCCACGTGTTGGTTATGGTATGGTGGCAGGTGCCTATGGTGCTGGATACGGTGCTGCAGGTCTTGCACAGCCCTTAATATATGGAAGGGGTCCAACTCCTGCCGGGATGgccatgatgcccatgcttcTGCCTGACGGACGGATTGGCTATGTCCTGCAACAACCAGGAGTCCAGCCGCAAACCCCACCTTCACACCAGAGAGGCGGTAGGAATAGTGGTGGGGGTGGTTCCAAGAATGTTGGCAGTTCAAGCAAGGGAAGACATGGCAATGATGGTGGCCAAGGGCGCAGATACCGCCCGTATTA 1487 0.4136 MPRGKENSSSVAKPNEPEKPTESDEKIDLDETNDPEEAMDEEIEYEEVEEEEEVEEIEEEVEEEEDPEEEEEDPEDEEVEEVEEDDASHAMQNMSNDEGTKVEDDEQKKHAELLSLPPHGSEVYVGGIPHDASTEDLRAFCEPIGEVVEVRVMKGKDSGENKGFGFVAFRNVELASKAIDELNNKEFKGKKVKCSTSQAKHRLFIGNVPRSWGEEDLRKVVTEIGPGITAVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNITQDQLKKLFEHHGKITKVVLPPAKSGQERNRIGFVHFAERSSAMKALKNTERYELEGQVLECSLAKPQADQKSAGSNTQKPGLLPSYPPRVGYGMVAGAYGAGYGAAGLAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGVQPQTPPSHQRGGRNSGGGGSKNVGSSSKGRHGNDGGQGRRYRPY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02249 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Bva07g02249 495 MobiDBLite consensus disorder prediction 375 389 - -
Bva07g02249 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 283 IPR000504 GO:0003723
Bva07g02249 495 MobiDBLite consensus disorder prediction 27 85 - -
Bva07g02249 495 MobiDBLite consensus disorder prediction 1 107 - -
Bva07g02249 495 Gene3D - 284 413 IPR012677 -
Bva07g02249 495 SMART rrm1_1 122 195 IPR000504 GO:0003723
Bva07g02249 495 SMART rrm1_1 296 369 IPR000504 GO:0003723
Bva07g02249 495 SMART rrm1_1 202 279 IPR000504 GO:0003723
Bva07g02249 495 Coils Coil 38 67 - -
Bva07g02249 495 Gene3D - 4 201 IPR012677 -
Bva07g02249 495 SUPERFAMILY RNA-binding domain, RBD 289 395 IPR035979 GO:0003676
Bva07g02249 495 MobiDBLite consensus disorder prediction 372 392 - -
Bva07g02249 495 MobiDBLite consensus disorder prediction 448 483 - -
Bva07g02249 495 Gene3D - 202 282 IPR012677 -
Bva07g02249 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Bva07g02249 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 266 IPR000504 GO:0003723
Bva07g02249 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Bva07g02249 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Bva07g02249 495 SUPERFAMILY RNA-binding domain, RBD 118 287 IPR035979 GO:0003676
Bva07g02249 495 PANTHER RNA RECOGNITION MOTIF 1 469 - -
Bva07g02249 495 MobiDBLite consensus disorder prediction 447 495 - -
Bva07g02249 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 469 - -
Bva07g02249 495 CDD RRM_SF 123 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02249 Bva-Chr7 18625119 18630576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02249 123 469 Eukaryotic Initiation Factors Gene Family AT2G23350 24.219 6.18e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02249 K13161 - gmx:100785076 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02249 07 18625119 18630576 Bva07g02249 07 18625119 18630576 ECH