Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02200 ATGGCTGAAATTGAAGTTCCTCAATATTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACGGCGGTGACAGGCATAACATACGACAGAGAAAGCATAGAGCAGTGGTTGATGACCGCCAAAGACTGCACCTGCCCTGTCACAAAGCAGCCATTGCCAAGAGACTCTGACTTGACTCCAAATCACACTCTGCGAAGGCTAATCCAGGCTTGGTGCTCAGGGAACGGAGTTGATCGGATCCCAACCCCAAAAACTCCTCTCAACAAGACTCACTTTCAGAAACTCATCAGAGATCTCGAGCTTACTCGTTTGCATCAAAACGCGTTGGAGAAACTGTATGCTTTGGCCACAGAGAACGAGAGGAACAGAAAGCACATGGCAGAGGCTGGTGTTGCCAACGCTATGGTTCCCATCGTTATTAAGTGTTTCAAGCAAGGTAAGACTTCATCTCTTGAAGAAGCTTTGGTAATCCTTCGTCTTCTTTGGAGTGGTCCAACATTGAAGCCTCTGGTTGATGAAAATTTGGACCTCATCAACGCTTTGACCTGGATTTTGCAACTTCACGTGGACAACAATGTCAAATTGGTAAACGAAGCAATGCCCATCTTGAATTCGGctattgaaatttcaaattcaaccCTCTTAGGTAACTTGAagcttgaatttttcaaagaaatcaCAAGGGTACTGAGAAGCAGAGCAGTGTCTCACCAAGCTGTCAAATCTGCTCTGCATGCCTTAATTGAAACGTGTCCTTTAGGTAGAAACCGGATGAAGATTGTTGAAGCAGGTGCAGTTTTCGAACTCATCGAGCTAGAGCTCACAAAACCCGAAAAGAACATAACTGAGCTTATCTTTGTCCTTTTAGCGCATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTCCGACACGGAGCAAGCTTCGCAGTGCTTTCTAAAAGGATTCTAAGAGTTTCACCTACAACAGACGATAGAGCTGTTCATACACTTTCCATGATAGCTAAGTATTCGGCATCAGCCGACGTCGTTTCGGAGATGTTGAAGGTTGGCGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCGGATTGTGCTTcgtacataaaagaaaaagcaagagGGATTCTAAGGCTGCACTCCAAAACTTGGAATAATTCTCCATGTATTCAAGTATATTTGTTAACCAGACACCAAAGGTG 1208 0.4288 MAEIEVPQYFACPISLQIMKDPVTAVTGITYDRESIEQWLMTAKDCTCPVTKQPLPRDSDLTPNHTLRRLIQAWCSGNGVDRIPTPKTPLNKTHFQKLIRDLELTRLHQNALEKLYALATENERNRKHMAEAGVANAMVPIVIKCFKQGKTSSLEEALVILRLLWSGPTLKPLVDENLDLINALTWILQLHVDNNVKLVNEAMPILNSAIEISNSTLLGNLKLEFFKEITRVLRSRAVSHQAVKSALHALIETCPLGRNRMKIVEAGAVFELIELELTKPEKNITELIFVLLAHLCSCADGREQFLRHGASFAVLSKRILRVSPTTDDRAVHTLSMIAKYSASADVVSEMLKVGAVSKLCMVMQADCASYIKEKARGILRLHSKTWNNSPCIQVYLLTRHQR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02200 402 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Bva07g02200 402 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Bva07g02200 402 SUPERFAMILY ARM repeat 109 381 IPR016024 -
Bva07g02200 402 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Bva07g02200 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Bva07g02200 402 Gene3D - 93 393 IPR011989 -
Bva07g02200 402 SUPERFAMILY RING/U-box 4 83 - -
Bva07g02200 402 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Bva07g02200 402 CDD RING-Ubox_PUB 10 53 IPR045210 -
Bva07g02200 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02200 Bva-Chr7 18400220 18401707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02200 3 392 U-box Gene Family AT2G35930 43.250 9.63e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02200 - - gmx:100787419 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00445 09 2364624 2365832 Bva07g02200 07 18400220 18401707 BWGD
Bva07g02200 07 18400220 18401707 Bva07g02200 07 18400220 18401707 ECH