Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02179 ATGGAGGGTCCGGATATGGAAGAGCATAAGAATTCTGAGGCGCATTTGACTTCAGCTGCCGCATTTGTAGAGGGAGGAATCCAGGAAGCATGCGATGATGCTTGCAGCATTTGTCTTGAAGCCTTTTGTGATAGTGATCCTTCGACAGTGACAAGTTGCAAGCACGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAACCCATCAGCCTCAAAGATCCAACTAGCCAGGAATTGCTTGAGGCAgtggaaagagaaaggaacTTTAGGTTAAACCCACCTAGAAATGCTACAATATTTCACCATCCAACACTTGGGGATTTTGAGTTACAGCATTTGCCAGTTGGTGCAAATGATTCTGACCTTGAAGAGCGTATAATCCAGCACTtagctgctgctgctgcaatGGGGCGAGCACGCCACATTGCTAGAAGGGAAGGGCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACATTTCTTGGTATTTTCAAGTCATCCTAATGCATCTTCCTCTCCAACTCATAGTGGGGATGGTGAACCAAATCCTGCAATCACTGTAGCTACTGTACCTCCAACTCCTGCAACTGGAGAAGAGTTGTCATTTCCAACTTCAGTTCCTACTGTTCAAGCTGGACAGGTTTCTGCTTCAGGATCTGGATCTACTGCTGTTGTTGCTGAGCAGCATGGGTCATCTTTCAATAATAGGAGATCTCCTAGTCAGTTGTCCCAAAGTAATCAAGATAGGGCAGGGCCATCTGAGTTCCAATCATTTTCAGAATCTCTGAAGTCACGATTAAATGCAGTGTCAATGAGATACAAAGAGTCAATTTCCAAGAGCACCAGAGGATGGAAGGAGAGATGGTTCTCTCGCAACACCTCTATGTCTGATATGGGATCTGAAGTTAGAAGAGAGGATAATGCAGGGATTGCAACTGTATCACGCATGATGGAACGTCTGGAAACCGGAGACAGTAATAGAACTATTAGCGATTCAGCACCaactaattttgaaaatagtcCAATTCCAGGATCGAATAACCAGCAATCCTCAAACTCTGGAGGTGACAGTCTTCTAGGAGAGAGTAATACAGAAACATCTTGTGCTGCAAGTTCTAGTTCAATTTA 1157 0.4296 MEGPDMEEHKNSEAHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRLNPPRNATIFHHPTLGDFELQHLPVGANDSDLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSSHPNASSSPTHSGDGEPNPAITVATVPPTPATGEELSFPTSVPTVQAGQVSASGSGSTAVVAEQHGSSFNNRRSPSQLSQSNQDRAGPSEFQSFSESLKSRLNAVSMRYKESISKSTRGWKERWFSRNTSMSDMGSEVRREDNAGIATVSRMMERLETGDSNRTISDSAPTNFENSPIPGSNNQQSSNSGGDSLLGESNTETSCAASSSSI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02179 385 Pfam Ring finger domain 34 75 IPR001841 -
Bva07g02179 385 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Bva07g02179 385 MobiDBLite consensus disorder prediction 331 385 - -
Bva07g02179 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 4 384 - -
Bva07g02179 385 MobiDBLite consensus disorder prediction 171 189 - -
Bva07g02179 385 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 384 - -
Bva07g02179 385 MobiDBLite consensus disorder prediction 336 385 - -
Bva07g02179 385 MobiDBLite consensus disorder prediction 171 268 - -
Bva07g02179 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 84 IPR013083 -
Bva07g02179 385 SMART ring_2 35 75 IPR001841 -
Bva07g02179 385 MobiDBLite consensus disorder prediction 208 268 - -
Bva07g02179 385 SUPERFAMILY RING/U-box 27 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02179 Bva-Chr7 18264534 18268922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02179 32 83 C3H Transcription Factor Family AT4G00335 44.231 6.15e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02179 K19043 - gmx:100814908 570.852