Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva07g02179 | ATGGAGGGTCCGGATATGGAAGAGCATAAGAATTCTGAGGCGCATTTGACTTCAGCTGCCGCATTTGTAGAGGGAGGAATCCAGGAAGCATGCGATGATGCTTGCAGCATTTGTCTTGAAGCCTTTTGTGATAGTGATCCTTCGACAGTGACAAGTTGCAAGCACGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAACCCATCAGCCTCAAAGATCCAACTAGCCAGGAATTGCTTGAGGCAgtggaaagagaaaggaacTTTAGGTTAAACCCACCTAGAAATGCTACAATATTTCACCATCCAACACTTGGGGATTTTGAGTTACAGCATTTGCCAGTTGGTGCAAATGATTCTGACCTTGAAGAGCGTATAATCCAGCACTtagctgctgctgctgcaatGGGGCGAGCACGCCACATTGCTAGAAGGGAAGGGCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACATTTCTTGGTATTTTCAAGTCATCCTAATGCATCTTCCTCTCCAACTCATAGTGGGGATGGTGAACCAAATCCTGCAATCACTGTAGCTACTGTACCTCCAACTCCTGCAACTGGAGAAGAGTTGTCATTTCCAACTTCAGTTCCTACTGTTCAAGCTGGACAGGTTTCTGCTTCAGGATCTGGATCTACTGCTGTTGTTGCTGAGCAGCATGGGTCATCTTTCAATAATAGGAGATCTCCTAGTCAGTTGTCCCAAAGTAATCAAGATAGGGCAGGGCCATCTGAGTTCCAATCATTTTCAGAATCTCTGAAGTCACGATTAAATGCAGTGTCAATGAGATACAAAGAGTCAATTTCCAAGAGCACCAGAGGATGGAAGGAGAGATGGTTCTCTCGCAACACCTCTATGTCTGATATGGGATCTGAAGTTAGAAGAGAGGATAATGCAGGGATTGCAACTGTATCACGCATGATGGAACGTCTGGAAACCGGAGACAGTAATAGAACTATTAGCGATTCAGCACCaactaattttgaaaatagtcCAATTCCAGGATCGAATAACCAGCAATCCTCAAACTCTGGAGGTGACAGTCTTCTAGGAGAGAGTAATACAGAAACATCTTGTGCTGCAAGTTCTAGTTCAATTTA | 1157 | 0.4296 | MEGPDMEEHKNSEAHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRLNPPRNATIFHHPTLGDFELQHLPVGANDSDLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSSHPNASSSPTHSGDGEPNPAITVATVPPTPATGEELSFPTSVPTVQAGQVSASGSGSTAVVAEQHGSSFNNRRSPSQLSQSNQDRAGPSEFQSFSESLKSRLNAVSMRYKESISKSTRGWKERWFSRNTSMSDMGSEVRREDNAGIATVSRMMERLETGDSNRTISDSAPTNFENSPIPGSNNQQSSNSGGDSLLGESNTETSCAASSSSI | 385 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva07g02179 | 385 | Pfam | Ring finger domain | 34 | 75 | IPR001841 | - | |
Bva07g02179 | 385 | ProSiteProfiles | Zinc finger RING-type profile. | 35 | 75 | IPR001841 | - | |
Bva07g02179 | 385 | MobiDBLite | consensus disorder prediction | 331 | 385 | - | - | |
Bva07g02179 | 385 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHF2A | 4 | 384 | - | - | |
Bva07g02179 | 385 | MobiDBLite | consensus disorder prediction | 171 | 189 | - | - | |
Bva07g02179 | 385 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 4 | 384 | - | - | |
Bva07g02179 | 385 | MobiDBLite | consensus disorder prediction | 336 | 385 | - | - | |
Bva07g02179 | 385 | MobiDBLite | consensus disorder prediction | 171 | 268 | - | - | |
Bva07g02179 | 385 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 84 | IPR013083 | - | |
Bva07g02179 | 385 | SMART | ring_2 | 35 | 75 | IPR001841 | - | |
Bva07g02179 | 385 | MobiDBLite | consensus disorder prediction | 208 | 268 | - | - | |
Bva07g02179 | 385 | SUPERFAMILY | RING/U-box | 27 | 83 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva07g02179 | Bva-Chr7 | 18264534 | 18268922 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva07g02179 | 32 | 83 | C3H Transcription Factor Family | AT4G00335 | 44.231 | 6.15e-11 | 59.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva07g02179 | K19043 | - | gmx:100814908 | 570.852 |