Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02159 ATGGAGCTTCGTTCTCGTAGACGGATATCTGGTCCCAAAATCGAAGCAACAGGAAGCGAACGTCAGGATAAGGATGCCTCTAGGGAAGCTGATTCTAATAACCAGTGTGGCGATAGTACAGACGAAGATGTTTATGTGCCATCTTCCGATTTGGGTTCAGATTGCGAAGATGGAAATGTTTGCAGGAACTTCCGTTTTGACCTAAATCAAGAACCAACTTCTAGCATGGATAGTTCTGATAGTGACGATTACTCTGCTGATTCATCTGATGTTGAGGAACTTTTCcctaaaaagagaaaggtgCAGTCCAGAAAGAAGGGCAAAGGCAGAGAACAGAGTGAGGCAGGGAGAGGCGAGTATCATGGGCAAGACCAGCAGCAGTCAGTTGATATTCATCCTGTTAGactgaaaaacaagaaaaatggaaagaaaaagagaaaagaggagTCTCGGCCTGTGTTGTTGTGGCATATATGGGAAGATGAGCAAGAGAGGTGGATTGATAGGAATTTGTTGGAAGATGTTGAATTAGATGTTCAGAATGAAGTATTGAATGAAACTGTTGACCCATCATCTGATCTGACTATGCCTTTGCTAAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCAGAGATTCGAGGGGGAATCCTTGCTGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTTCCCTTGTTCTTGCTCAACGTGAAATCCAGAGATTGATTTGTGAACCAGATAAACCCTCACCCTCACTCTCACCAGGTTCATCTACAGTATTGCCTGCGATCAAAGGAACACTTGTAGTTTGTCCTGTGGTTGCTGTCACCCAGTGGGTTAGTGAAATTGATCGATTCACCTCTAAAGGAAGCACCAAGGTGCTAGTCTATCATGGGGCCAGGAGAGGGAAGAGTGGTGAAGAATTATTGAATTATGATTTTGTAATAACTACATATTCTATTGTTGAGTCTGAGTACAGAAAGTATCTCATGCCTCCTAAGCATAAGTGCCCTTATTGTGGCAAATTGTTCTACCAGAATAAGTTATCTATCCActggaaatatttttgtggGCCTTATGCTGAGAGAACAGAAAAACAATCAAAGCAagttaagaagaagaaaaaagatgttACTAAACAGAAGATCAATGACTATGAGAATGGGAAAGATAAGGGAGCTCACAAGCAGAAGTTGACACTTTGGAGCGATGAAGAACTGGAATTGGACTTGAGAATAGAAAATTCTGATGCTACACGTCGAGGGAAGTCGCTTCTACATGCTGTAAAGTGGCAGCGGATCATCTTGGATGAGGCACACTACATAAAATCTAGACATTGTAATACAGCAAAAGCAGTTCTTGCTCTGGAGTCTTCGTACAGATGGGCATTAAGTGGCACCCCCCTTCAGAACCGTGTTGGGGAGCTGTATTCTCTTGTGCGGTTCCTGCAAATAGTTCCTTATTCCTATTATTTGTGCAAGGACTGTGATTGTAGAACTCTTGATCATAGTTCCTCTAAAGACTGTCCTAACTGCCCCCACAGTTCTGTCAGACATTTTTGTTGGTGGAATAAATATGTTGCCACACCAATACAATCATATGGGTATGGTGATAGTGGAAAAAGAGCTATGATATTGCTTAAGCACAAAGTCTTGAGGAACATAGTGCTAAGGCGAACTAAATTAGGCAGAGCTTCTGATCTGGCACTTCCACCTAGAATTGTTTCATTGAGGAGGGACAGTTTGGATATAAAAGAGCAAGACTACTATGAATCATTATACAATGAAAGTCAGGCACAGTTTAATACGTATGTTGAAGCAAATACTCTCATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTGCGGCagGCTGTTGATCATCCATACCTTGTAGTATATTCTCAAGCTGCAGCATTGAGAGGTGGAAGTGCGGTTTGTAGTTCTAGTAGTGAACGAGCATGTGGTCTTTGTCATGACCCAGTGGAAGATCCTGTGGTTACCTCTTGTGAGCATATATTTTGCAAGCAATGCTTAATAGATTTCTCATCTTCCTTGGGACGTGTATCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCAAAAAATGACCCCGGGGCtaataaaacaacaattaagGGTTTCCGTTCCTCAAGCATTTTAAACAGAATTCATCTTGAGAACTTCCAAACAAGCACCAAAATAGAAGCTTTGagagaagaaattagatTTATGGTCGAAAGGGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATAAACTACTCCCTACTCAAGTCTGGTATATCTTGCGTTCAATTAAACGGAAGCATGACATTGGCTGCCAGGGATGCTGCCATTAAGAGATTCACTGATGATCCAGACTGCAGAATTTTTCTCATGAGTCTGAAGGCTGGTGGTATCGCTCTCAATTTGACGTTAGCGTCGCACGTTTTTCTTATGGATCCTTGGTGGAACCCGGCAGTGGAGCGTCAGGCTCAAGACAGGATTCACCGAATAGGCCAATATAAACCTATCAGAATTGTGAGGTTTGTGATTGAGAACACAATAGAGGAGAGGATTTTGAAACtgcaagaaaagaaggaactGGTGTTTGAAGGGACCGTTGGCGGATCTTCTGAGGCACTGGGGAAATTGACAGAGGAAGACTTGAGATTTCTGTTTGTCACCTA 2744 0.4009 MELRSRRRISGPKIEGSERQDKDASREADSNNQCGDSTDEDVYVPSSDLGSDCEDGNVCRNFRFDLNQEPTSSMDSSDSDDYSADSSDVEELFPKKRKVQSRKKGKGREQSEAGRGEYHGQDQQQSVDIHPVRLKNKKNGKKKRKEESRPVLLWHIWEDEQERWIDRNLLEDVELDVQNEVLNETVDPSSDLTMPLLRYQKEWLAWALKQENSEIRGGILADEMGMGKTIQAISLVLAQREIQRLICEPDKPSPSLSPGSSTVLPAIKGTLVVCPVVAVTQWVSEIDRFTSKGSTKVLVYHGARRGKSGEELLNYDFVITTYSIVESEYRKYLMPPKHKCPYCGKLFYQNKLSIHWKYFCGPYAERTEKQSKQVKKKKKDVTKQKINDYENGKDKGAHKQKLTLWSDEELELDLRIENSDATRRGKSLLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHSSSKDCPNCPHSSVRHFCWWNKYVATPIQSYGYGDSGKRAMILLKHKVLRNIVLRRTKLGRASDLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQAAALRGGSAVCSSSSERACGLCHDPVEDPVVTSCEHIFCKQCLIDFSSSLGRVSCPSCSKLLTVDLTSKNDPGANKTTIKGFRSSSILNRIHLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGISCVQLNGSMTLAARDAAIKRFTDDPDCRIFLMSLKAGGIALNLTLASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEEDLRFLFVT 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02159 912 CDD DEXDc_SHPRH-like 196 501 - -
Bva07g02159 912 SUPERFAMILY RING/U-box 654 704 - -
Bva07g02159 912 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 712 IPR013083 -
Bva07g02159 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 562 IPR027417 -
Bva07g02159 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 902 IPR001650 -
Bva07g02159 912 SMART ultradead3 192 507 IPR014001 -
Bva07g02159 912 Pfam Helicase conserved C-terminal domain 742 856 IPR001650 -
Bva07g02159 912 Gene3D - 578 911 IPR027417 -
Bva07g02159 912 Gene3D - 363 577 IPR038718 -
Bva07g02159 912 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 132 387 - -
Bva07g02159 912 Gene3D - 151 343 IPR038718 -
Bva07g02159 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 489 IPR014001 -
Bva07g02159 912 Coils Coil 364 384 - -
Bva07g02159 912 PANTHER - 749 909 - -
Bva07g02159 912 MobiDBLite consensus disorder prediction 64 80 - -
Bva07g02159 912 ProSitePatterns Zinc finger RING-type signature. 675 684 IPR017907 -
Bva07g02159 912 PANTHER - 132 387 - -
Bva07g02159 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 910 IPR027417 -
Bva07g02159 912 MobiDBLite consensus disorder prediction 1 143 - -
Bva07g02159 912 CDD SF2_C_SNF 740 867 - -
Bva07g02159 912 ProSiteProfiles Zinc finger RING-type profile. 660 700 IPR001841 -
Bva07g02159 912 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 420 747 - -
Bva07g02159 912 SMART ring_2 660 699 IPR001841 -
Bva07g02159 912 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 749 909 - -
Bva07g02159 912 SMART helicmild6 773 856 IPR001650 -
Bva07g02159 912 Pfam SNF2-related domain 210 637 IPR000330 GO:0005524|GO:0140658
Bva07g02159 912 PANTHER - 420 747 - -
Bva07g02159 912 Pfam Zinc finger, C3HC4 type (RING finger) 660 699 IPR018957 GO:0046872
Bva07g02159 912 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02159 Bva-Chr7 18173097 18180123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02159 138 912 RAD5 or RAD16-like Gene Family AT1G05120 68.590 0.0 1096
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva07g02159 SNF2_N 1.1e-49 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02159 07 18173097 18180123 Bva07g02159 07 18173097 18180123 ECH