Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02117 ATGGACATCTACTCCTGCGACAACTCCAATTGGCTTTGTGATTATGGCTTTGATGTCTCCGTTGCGGCCAGTGACTTCCCGGCAGCAGCCTCCGCTGGTTTCACGTGGCTACCTCAATCCTGCAAAGATTCTCCCGATTTCAGCGAATACTCACTGGCTACCTCACCTATCTTGGAGAATGGCCCTCCAAAACGGTTGAGGTCTGAATCATGTGCAACTGGCTCCAAGGCATGTCGTGAGAAACTGCGAAGGGATAAACTGAATGAGAGGTTCCTGGAACTGAGTTCAATCTTGGAGCCTGGTAAGGTGCCCAAAACGGACAAGACTGCTATATTAAGTGACGTAGTTCGAATGGTGACCCAGTTAAGAAGTGAAGCACAGAAGCTGAAGAAGGAAAACGATGAAATGCttgaaaagattaaagaatTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATAAGCTAAAGATGGATAAGGAAAACTCAGAGCAACAGCTCAAAGCAATTAATGCGCATCCCAACTTCCTCTCTCATCCTTCTGCTGCATCAGCTGCTAAAGGGCAAACTGGTAGCCACAAGCTGATACCTTATATTGGTTACCCGGGAATTGCGATGTGGCAATTCATACCACCTGCTGCACTGGACACATCAAAGGATCATCTGCTTCGCCCTCCTGTTGCTTA 689 0.4659 MDIYSCDNSNWLCDYGFDVSVAASDFPAAASAGFTWLPQSCKDSPDFSEYSLATSPILENGPPKRLRSESCATGSKACREKLRRDKLNERFLELSSILEPGKVPKTDKTAILSDVVRMVTQLRSEAQKLKKENDEMLEKIKELKAEKNELRDEKNKLKMDKENSEQQLKAINAHPNFLSHPSAASAAKGQTGSHKLIPYIGYPGIAMWQFIPPAALDTSKDHLLRPPVA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02117 229 CDD bHLH_AtILR3_like 76 151 - -
Bva07g02117 229 Coils Coil 112 174 - -
Bva07g02117 229 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983
Bva07g02117 229 PANTHER BHLH TRANSCRIPTION FACTOR 3 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bva07g02117 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983
Bva07g02117 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 3 229 - -
Bva07g02117 229 SMART finulus 77 128 IPR011598 GO:0046983
Bva07g02117 229 Gene3D - 75 148 IPR036638 GO:0046983
Bva07g02117 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02117 Bva-Chr7 17972541 17975045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02117 3 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 52.521 7.11e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva07g02117 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02117 - - gmx:100806838 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02117 07 17972541 17975045 Bva07g02117 07 17972541 17975045 ECH