Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02020 ATGGACTTAGATCGGTACTTTGAGGAGGTTGTGCCCCAAAAGTGGAATTCTGATTCGGATTGTGATAGAAATGGCTCTGGTAGCTTTGACTGCAACATCTGCCTTGATAGTGTGCAAGATCCAGTGGTCACTCTCTGCGGTCATCTTTACTGCTGGCCTTGCATTTACAAGTGGCTTCGTTTCCATTCAGAAAACCAAGAGCAGCAGAGACCACGGTGCCCAGTTTGCAAATCACTTGTTTCTCAAACATCCCTGGTTCCATTATACGGCCGTGGCAGCACCAGAAAACCTTATAAAGGCAAGGCCTCCCCTGTAGGCATGGCCATACCGCCAAGACCCTCTGGCCCCGCATGGATGCTTGATTCATCAACGTCAACAAATAATACCAGCACCTTTCCCCAACCAGCTTCACAATTTTATCAGCGCCATTATCCTTATCATCCTCAGCAATTCAACTCTGCCACAACCAATTACACTTCATCAGCAACAAATGCATCTGATAGCACATTTGGAGTTTTCGGCGAGATGATATTCGCGAGAGTGTTTGGTAATCGAGTAACAAACTTACACACTTACCCGGATTCATATCGTCTTACTGGGAACAATAATCCAAGGATCAGAAGGCAGTTAATGCAAGCTGACAAGTCACTCAGCAGAATCAGTTTCTTCCTCCTTTGTTGTGTAGTTTTGTGTCTTCTCTTATTCTG 707 0.454 MDLDRYFEEVVPQKWNSDSDCDRNGSGSFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLRFHSENQEQQRPRCPVCKSLVSQTSLVPLYGRGSTRKPYKGKASPVGMAIPPRPSGPAWMLDSSTSTNNTSTFPQPASQFYQRHYPYHPQQFNSATTNYTSSATNASDSTFGVFGEMIFARVFGNRVTNLHTYPDSYRLTGNNNPRIRRQLMQADKSLSRISFFLLCCVVLCLLLF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02020 235 Pfam RING-type zinc-finger 31 74 IPR027370 -
Bva07g02020 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 89 IPR013083 -
Bva07g02020 235 SMART ring_2 31 76 IPR001841 -
Bva07g02020 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva07g02020 235 SUPERFAMILY RING/U-box 28 89 - -
Bva07g02020 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 13 235 - -
Bva07g02020 235 CDD RING-HC_AtRMA_like 29 78 - -
Bva07g02020 235 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Bva07g02020 235 ProSiteProfiles Zinc finger RING-type profile. 31 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02020 Bva-Chr7 17540022 17541829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02020 24 235 C3H Transcription Factor Family AT4G28270 39.545 1.39e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02020 K10666 - gmx:100786373 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02020 07 17540022 17541829 Bva07g02020 07 17540022 17541829 ECH