Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02003 ATGGATCATCGTCAGCAGCTTGCAAgccaattttcttcttctaccaAAATCGAAAGAAGGATcattgagaaaaatagaagaaaccaAATGAAGATCCTCTACTCCAAACTCAACTCTCTGCTCCCAAGTTATAACTCCAAGGAAACGTTGCCACTGCCTGATCAAATAGACGAGGCTATTAGCTACATAAAGAGCCTAGAGACAAAGGTGAAGGTGGccaaggagaagaaagaaagcttAACGAGGAAAAGGTCACATACTTGTTGTTCGAGTTCTTTTGAAACCATGGGAAGCCTAAAATCGCCAAAGATTGAAATTCACGAAGTGGGTTCTTCACTTCAGATTGTTCTGATCAGTGGATTGGATAGTCAGTTCATTTTCTATGAAATTATTCGCATACTTCACGAAGAGAACATAGATGTCGTCAGTGCTAACTCTTCACTTGCTGGGAATTCTATGTCTCACGTTGTACATGcacagATTGGAGAATCTTCGCATCAATTCGGAGCTACAAAAGTGAGCGAGAGATTGAAAAGGTTTGTGTATGGATCGGCCAGTGATGTGGAGAGTCAGCTGGAGTTGTGGGATTTTGAAATTGGTACTGATGATACGTGGGATTTCAAAATCCTACAATA 635 0.3669 MDHRQQLASQFSSSTKIERRIIEKNRRNQMKILYSKLNSLLPSYNSKETLPLPDQIDEAISYIKSLETKVKVAKEKKESLTRKRSHTCCSSSFETMGSLKSPKIEIHEVGSSLQIVLISGLDSQFIFYEIIRILHEENIDVVSANSSLAGNSMSHVVHAQIGESSHQFGATKVSERLKRFVYGSASDVESQLELWDFEIGTDDTWDFKILQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02003 211 Gene3D - 8 92 IPR036638 GO:0046983
Bva07g02003 211 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 12 188 - -
Bva07g02003 211 Coils Coil 56 83 - -
Bva07g02003 211 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 188 IPR015660 GO:0003700|GO:0006357
Bva07g02003 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 87 IPR036638 GO:0046983
Bva07g02003 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Bva07g02003 211 Pfam Helix-loop-helix DNA-binding domain 18 67 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02003 Bva-Chr7 17453953 17455148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02003 9 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.895 3.29e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva07g02003 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02003 - - gmx:100817883 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02003 07 17453953 17455148 Bva07g02003 07 17453953 17455148 ECH