Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02002 ATGTCACTGCACGCTCTCAAGGAAACTCTCAGGCCCTGCACAACTCAATCTTCTGCATCTATAAGTCAAACACagtcttcaatttttcttgattctgACTTAGCAATCCCTAGAAAACCCCCGAAATCCTCTGTCATTCAGCAGCTTCGTCGCCTGCAAGACCCGCTTTCTGCTCCGCCCATTCAGCCTCACGGTTCACAAAAgcgagaaagagagagggacCAGAAAAGCGGTGGACGTGAggatgaggaagaagatgaagaaaaggaagagccAGAGCTGAAGAGGGCAAGATCTGGTGGTGTTAAATTGTCCCATTTTCAGTTTGATCATACAGGACCCTTTGAGCCTCTGCTCCTGTCTTCGCCTGGAGAAGTTCCAGTGATACAgATTCCTGCATCTATCAACTGCAGATTGCTTGAACATCAAAGAGTGGGAGTGAAGTTTTTGTATGGTTTGTACAAGTACAACCATGGAGGCATTCTTGGAGATGACATGGGTCTGGGGAAAACCATACAAACAATAGCTTTTCTTGCTGCAGTGTTTGGTAAAGATGGCGAGCATGTTCGAAGGGGAAATCaaggagagaagagagatCCTGTATTAATAATATGCCCAACTTCTGTTATTCACAACTGGGAGAATGAATTCTCGAAGTGGGCTTCCTTTACTGTTTCTATTTATCATGGTGCAAATCGGGATCTGATATATGATAAATTGGAGGCGCATGGAGTGGAGATTCTTATTACCAGTTTTGACACATTCAGAATTCATGGCAGTGCCTTGTCAGATATCAATTGGGACATTGTGATTATTGATGAGGCCCATCGGCTTAAGAATGAGAAATCTAAACTCTATACAGCatgtttagaaattaaaacttgGAAACGCATTGGTCTTACTGGAACCATAATGCAAAATAAGATCATGGAATTGTTTAATCTCTTTGATTGGGTTGCACCCGGATCCCTTGGAACACGGGAACACTTTCGAGAGTTCTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCGCCTGAAAGATTTGTCCAGATTGCTAATGAGCGAAAACAGCACCTTGTGTCAGTTCTTCAGAAATATATGTTAAGaaggacaaaggaagagactATTGGGCATCTGATGATGGGAAAAGAAGATAACGTTGTGTTTTGTGCCATGAGTGAATTGCAAAAACGGGTTTACAGTAGAATCTTGCAACTTCCTGACATCCAGTGTCTTATAAATAAGGACCTTCCCTGTAGTTGTGGAAGCCCTCTTACTCAAGTTGAATGCTGTAAGAGGATTGTACCGGATGGAATTATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGTCTTGTGCTTCCTTGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCcagagaaacaaagaaaagatgcAGAGTTTGCTGAAGCTGTCTTTGGCCCTGATATTGATTTAGTAGGTGGGAACGCGCAGGATGAGAGTTTTATGGGTCTAAGTGATGTGAAACATTGCGGCAAAATGCGAGCAATTGAGAAGTTATTATTTTCGTGGATCTCGCATGGTGACAAAGTTCTTTTATTCAGCTATTCAGTGAGGATGTTGGACATATTGGAGAAATTTCTTGTGAGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCAACTCCCACTAACTTACGTCAATCTCTGGTTGATGACTTCAATTCAAGTCCTAGCAAACAAGTATTTCTTATATCCACCCGAGCTGGAGGCCTTGGATTAAACCTTGTGAGTGCAAATCGTGTGGTGATATTTGATCCCAACTGGAATCCCGCGCAAGACCAACAGGCTCAAGATAGGTCCTTCCGTTTTGGGCAGAAGCGGCATGTTGTGGTGTTCCGCCTTCTTGCTGCTGGTTCACTTGAAGAGCTTGTTTATTCCCGTCAAGTCTACAAGCAGCAGTTGTCAAACATCGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGCGTCCAGGATTGCAAGGAATTTCAAGGAGAGCTCTTTGGCATTTGCAACTTGTTTCGAGATTTATCTGATAAGCTATTTACTAGTGAAATCATTGAATTACATGAAAAGCAAGGAACGGAACATGGGTATACAACAGAACAAGAGCTAACTGATCTCGAGGAAAGCTCTGCCCCCTCTGAAGAAGCTCGTGTGACACGTAAACCGGATCTCGAAGAACTCGgCATTGTCTATGCTCATCGAAATGAAGACATCGTCAACTTCGGACCTGGGACTCAAGGGAAGATAGATACAAGCATCTCTAGAAGTGATAGCCTAACCGGACCGTGCATTCCTAAGCATAGAAAAAACAAACCTAATTTTGTagtagaaaaacaaaaagtccCTTTAATTGATGAGAGGAAGAGAATCCAATATAAACTGCTTGCCCGTCATATGGGCATGGGAGAACTTGAATTTAGCAAGTGGTTATTAACTGTAACTCCATCAGATAGAGAGAAAGTGCTTGAAGACtacaagaagagaaagaagacgCCGAACAGTTG 2600 0.3988 MSLHALKETLRPCTTQSSASISQTQSSIFLDSDLAIPRKPPKSSVIQQLRRLQDPLSAPPIQPHGSQKRERERDQKSGGREDEEEDEEKEEPELKRARSGGVKLSHFQFDHTGPFEPLLLSSPGEVPVIQIPASINCRLLEHQRVGVKFLYGLYKYNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEHVRRGNQGEKRDPVLIICPTSVIHNWENEFSKWASFTVSIYHGANRDLIYDKLEAHGVEILITSFDTFRIHGSALSDINWDIVIIDEAHRLKNEKSKLYTACLEIKTWKRIGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPERFVQIANERKQHLVSVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRVYSRILQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPDGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQRKDAEFAEAVFGPDIDLVGGNAQDESFMGLSDVKHCGKMRAIEKLLFSWISHGDKVLLFSYSVRMLDILEKFLVRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDQQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIELHEKQGTEHGYTTEQELTDLEESSAPSEEARVTRKPDLEELGIVYAHRNEDIVNFGPGTQGKIDTSISRSDSLTGPCIPKHRKNKPNFVVEKQKVPLIDERKRIQYKLLARHMGMGELEFSKWLLTVTPSDREKVLEDYKKRKKTPNS 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02002 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
Bva07g02002 866 Pfam SNF2-related domain 157 412 IPR000330 GO:0005524|GO:0140658
Bva07g02002 866 PANTHER SNF2/RAD54 FAMILY MEMBER 42 801 - -
Bva07g02002 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 372 IPR027417 -
Bva07g02002 866 MobiDBLite consensus disorder prediction 1 102 - -
Bva07g02002 866 MobiDBLite consensus disorder prediction 65 82 - -
Bva07g02002 866 MobiDBLite consensus disorder prediction 9 31 - -
Bva07g02002 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 693 IPR027417 -
Bva07g02002 866 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 42 801 - -
Bva07g02002 866 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Bva07g02002 866 Gene3D - 121 371 IPR038718 -
Bva07g02002 866 SMART helicmild6 557 640 IPR001650 -
Bva07g02002 866 SMART ultradead3 135 330 IPR014001 -
Bva07g02002 866 MobiDBLite consensus disorder prediction 723 747 - -
Bva07g02002 866 CDD SF2_C_SNF 522 651 - -
Bva07g02002 866 Gene3D - 384 743 IPR027417 -
Bva07g02002 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 322 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02002 Bva-Chr7 17445116 17450050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02002 159 670 RAD5 or RAD16-like Gene Family AT1G02670 25.806 1.78e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva07g02002 SNF2_N 2.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02002 K20098 - gmx:100781003 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02002 07 17445116 17450050 Bva07g02002 07 17445116 17450050 ECH