Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02000 ATggtatgcttgggatttgataTGGCTTCCAGTGAAAAAATGGAGATTTTTAAGAGGAGGGGAGTAGGGTTCCTATTCCAGATTGTTTTTAGCTTCTGGGTTGTTCTGTATCTTCGTCCAGTGGCAGGGTTGAGACCATTGAGGGAGAGAACTCGGTCCTGGGGCGATGAGTGGCTGTATACAGGGAAAGAGGAAAGTGACTCAGGCCAATTTTCACAATGGAACATAACCGGAACTTATAGAGGAGCTTGGAAATTTTTGGATACCACAAATGGATCTTCTAGGTTTCCAGACATCAGAAAAACCAATGGCAATTCTGTAATTGAATTAGTTAGTACACCAACAAAAATAACTGGTGTGCATTATGTTCAGGGAGTAGTTATATTCCATGATGTATTTGACAGCGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGCATGGTAGCCAGCAGTGGAAAGGAGGGAAAGTGGAATCAGGAGgatgattatattttatctaatccATATCATCTGCTTGGAGTTTTCTCATCCCAGGTATTCCAAGAATCTCCACGAGATAAGATGTGGAGAAAGAAGCATTCTCCGATGTATGACATGGAGAAACATTGTAATATTGAAATTGCTGCGCAGATTTCCCGTCTGTCATCATCAAAAAATGATGGGGATCGTGATCATTTCCACCTAGATGGGTTAATGGAGAGTCCCTCGGTGGATGATGATGGGGACTGCTTCTCCCCTTTACTGTTAAATGCAACTTCTGTTAACATTGAGGTCTATTATAACAAAGCAGTGAACTACACCTTGATGGTGACCTTCGTATCTTTCTTGCAAATTCTTCTATTGATTCGGCAAATGGAGCACAGCAACACTCAATCTGGAGCTGCCAAGGTTTCAATATTAATGATTGGCCAGCAAGCTATAATGGATGCTTACCTTTGCCTCTTGCATCTGACTGCAGGAATACTAGTTGAGTCCTTATTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGACCTTTGAGTAATGGGGAAGGTTGGGAGACTATGAGGCGTGAGCTTTCAGTTTTATATAGTCGATTCTATGGAATCCTGTTGGGAGGCATTCTGCTTATGTATGAGTTCCACAATTATTTGAGAcctattcttcttcttgtgtACTCGTTTTGGATACCTCAGATAATCACCAATGTAATTCGGGATTCCCGAAAACCATTGCATCCTCATTATATCCTAGGGATAACCCTCACTCGGCTAGCAATCCCTCTATATGTTTTTGGTTGCCCTCACAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTGTTTGTTTGGTTGTATTTATTGGAATTCAAGCTGCAGTTCTTGTACTTCAGCATTATCTTGGGTCTCGGTGGTTCATTCCTCGTCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGATCAAGATTCTAGTCATGTCACAGACTGTGTTATATGCATGACCGCCATTGATCTTACACAGCGATCTAGTGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCTCACTGCCACCTGCCTG 1721 0.4079 MVCLGFDMASSEKMEIFKRRGVGFLFQIVFSFWVVLYLRPVAGLRPLRERTRSWGDEWLYTGKEESDSGQFSQWNITGTYRGAWKFLDTTNGSSRFPDIRKTNGNSVIELVSTPTKITGVHYVQGVVIFHDVFDSEYNVGGAQIRVEGVYIWPFRQLRMVASSGKEGKWNQEDDYILSNPYHLLGVFSSQVFQESPRDKMWRKKHSPMYDMEKHCNIEIAAQISRLSSSKNDGDRDHFHLDGLMESPSVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQILLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLVYSFWIPQIITNVIRDSRKPLHPHYILGITLTRLAIPLYVFGCPHNFMRIEPDKSWCVCLVVFIGIQAAVLVLQHYLGSRWFIPRQILPEKYSYYRRFDQDSSHVTDCVICMTAIDLTQRSSDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02000 573 SMART ring_2 523 566 IPR001841 -
Bva07g02000 573 SMART ringv_2 522 567 IPR011016 GO:0008270
Bva07g02000 573 Pfam Ring finger domain 522 567 IPR001841 -
Bva07g02000 573 ProSiteProfiles Zinc finger RING-type profile. 523 567 IPR001841 -
Bva07g02000 573 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 17 573 - -
Bva07g02000 573 PANTHER RING ZINC FINGER PROTEIN 17 573 - -
Bva07g02000 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 573 IPR013083 -
Bva07g02000 573 SUPERFAMILY RING/U-box 522 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02000 Bva-Chr7 17433710 17440353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02000 523 570 C3H Transcription Factor Family AT4G12190 37.500 1.67e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02000 K23788 - qsu:112035018 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02000 07 17433710 17440353 Bva07g02000 07 17433710 17440353 ECH