Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01996 ATGGAAGCTGGGAATATTGATGGGTTTAAACCAAAGGCGGGGAACGAGAGGGTGGTGAAGAGGGAGGCTAATGGGGATTATGATGAGGAAAATAGGTACTTGGAGGaggataagaagaaaatttgccTTGGTGGGTCCGGGAAGAAAGGGTCCGGTGGTGGTAGCGGCGGAAGTACCATGCGTTGTTGTCAAGCGGAGAGCTGCACGGCGGATCTTAATGATGCGAAGCAGTATCATAGGAGGCACAAGGTGTGTGAATATCATGCTAAGGCTCAGGTAGTGCTTGTGGGTGGCATGCGCCAACGGTTTTGTCAGCAATGTAGCAGATTCCATGAGTTAGCTGAATTTGATGACACGAAAAGAAGTTGTCGCAGGCGTTTGGCTGGACATAACGAACGGCGGAGAAAGAATTCGGAGTCTCAAGCAGAAGGCTCAACCCGGAAAGGAACAGCCTCTCGGTTGAAGGACATTGTTTGTGGACAGGTTGATGACAGGGGGAGAATTCAGATAACCATTCAAGAAAATGCCACCATCAAACATTTCCAGATAAGATA 554 0.4729 MEAGNIDGFKPKAGNERVVKREANGDYDEENRYLEEDKKKICLGGSGKKGSGGGSGGSTMRCCQAESCTADLNDAKQYHRRHKVCEYHAKAQVVLVGGMRQRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKNSESQAEGSTRKGTASRLKDIVCGQVDDRGRIQITIQENATIKHFQIR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01996 184 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 33 184 - -
Bva07g01996 184 SUPERFAMILY SBT domain 61 140 IPR036893 GO:0003677|GO:0005634
Bva07g01996 184 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Bva07g01996 184 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 184 IPR044817 GO:0003677
Bva07g01996 184 MobiDBLite consensus disorder prediction 1 21 - -
Bva07g01996 184 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Bva07g01996 184 MobiDBLite consensus disorder prediction 128 151 - -
Bva07g01996 184 Pfam SBP domain 63 136 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01996 Bva-Chr7 17419030 17420557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01996 52 184 SBP-box Gene Family AT3G15270 54.074 2.48e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva07g01996 SBP 7.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01996 - - jre:108986645 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01996 07 17419030 17420557 Bva07g01735 07 16110173 16111719 ECH
Bva07g01996 07 17419030 17420557 Bva07g01996 07 17419030 17420557 ECH
Bva07g01996 07 17419030 17420557 Bva14g01400 14 6984736 6986473 ECH
Bva07g01996 07 17419030 17420557 Bva13g01153 13 5750559 5752168 ECH