Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01995 ATGCCTGCCCAGAAGCGGTCTTTGGCAGAGGCTCTGGACGAGGGAGAGACTTCACAGCTCTACCACCAGCGCCATGCCAAGCAATCTCAGCGCGACCGAGAACTCAGGAGTGAGGAGGAACGAGATGAGGAAGATGAACAGAAGCAGCACCAGCTGGGGGAAGAAGGAGACGCAGAAGATGGAGGACAACAGCAACACCGgcaggaagaagaagacaaagcAAAATCAGAGGATTCTGAGGAAAGCCCATCTTCTGGTCCTGAAGAAAAACCCGAATTTGTGACCGTAGAGCTTCCGGAAATTCGTAAAGATGTGCAATGTCCAATTTGTCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACAGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCCTGCCGCACACACTGTGCCAGTCGTCGTTCTTTGAGGGATGATCCAAACTATGATGCGCTTATTGCAGCTTTATATCCAGATATTGAGAAGTATGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACACGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTCCAACGGCAATCTGAAGCACTGGTTAAGAGACGCAATAAAGATACCCCAGGTGCATTTGTGACAAGATCTCAGCGCAATCAACGAAATGTTCAGTCTAGGAGACAAAACCAAGTGATTGATCTTCAAGGGTCTGATGATGAGGAAAATGACAATAATGGAGAAAAAGACTCGTCTTCTACTGATGAGCGGTGTGCAGAATTCAGCAAGAGAAGGCGAAAGAGGCGGCCCAGAGTTCGCCCTTCTCTGGCCTCATCATCAATGGCAAACCCTGATGGTGCAGGTATGGACAGTGACGAGGATGTAGGCAGAGAAAATCGAGGAATTTCTTCAAGGCAGGCATCAAAACCTCGAAAACTTACTTGGGGAAGGGGAGGCTTTAGGAGTCACACACGACATGGTGCAGGCGCTGGTGCCAATAACAAGAGCGCCCGCAGCTCTCGACTGTCTAAGTTGGTTGATTACCTCCGAAACTTAGATGAAAATGGTGATGAGTTGGATGTCCATCTCATGCTTGTTTCTTTGGATAAACAAACTTCACCATGTTTGGAGCAGCCGCACCTTTGCTGTCGGCCAACATTGTCTGTCAAGCATCTTTGTGAATATGTGGCTTGTCAGACACCTTTGCCAGCTGAGGAAGTTGAGATATTTGCAGTTAAAGGATGTAACAGTATAAATTCTGATAAGTCAGCCGATGAGAGTCCATTCTGCATGCATGAACTGACAACATTGGCTGTAGATCCATGCAAAGATGAACTGGAAATTTTGCAAGGAGATGAAACTTTGGCAGGGCTCAGATCCAAATGCATATCTAAAAGGGAGCATATGATTCTGGCATACAGGCGGAAGGAGGCAAtggaagttta 1469 0.4568 MPAQKRSLAEALDEGETSQLYHQRHAKQSQRDRELRSEEERDEEDEQKQHQLGEEGDAEDGGQQQHRQEEEDKAKSEDSEESPSSGPEEKPEFVTVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVQRQSEALVKRRNKDTPGAFVTRSQRNQRNVQSRRQNQVIDLQGSDDEENDNNGEKDSSSTDERCAEFSKRRRKRRPRVRPSLASSSMANPDGAGMDSDEDVGRENRGISSRQASKPRKLTWGRGGFRSHTRHGAGAGANNKSARSSRLSKLVDYLRNLDENGDELDVHLMLVSLDKQTSPCLEQPHLCCRPTLSVKHLCEYVACQTPLPAEEVEIFAVKGCNSINSDKSADESPFCMHELTTLAVDPCKDELEILQGDETLAGLRSKCISKREHMILAYRRKEAMEV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01995 489 MobiDBLite consensus disorder prediction 255 270 - -
Bva07g01995 489 MobiDBLite consensus disorder prediction 219 241 - -
Bva07g01995 489 ProSiteProfiles Zinc finger RING-type profile. 107 147 IPR001841 -
Bva07g01995 489 CDD RING-HC_RING1_like 107 147 - -
Bva07g01995 489 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
Bva07g01995 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 485 - -
Bva07g01995 489 MobiDBLite consensus disorder prediction 209 345 - -
Bva07g01995 489 SMART ring_2 107 146 IPR001841 -
Bva07g01995 489 SUPERFAMILY RING/U-box 96 161 - -
Bva07g01995 489 PANTHER OS11G0578200 PROTEIN 1 485 IPR044592 -
Bva07g01995 489 MobiDBLite consensus disorder prediction 9 93 - -
Bva07g01995 489 Pfam Zinc finger, C3HC4 type (RING finger) 106 146 - -
Bva07g01995 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 177 IPR013083 -
Bva07g01995 489 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01995 Bva-Chr7 17410981 17416029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01995 100 170 C3H Transcription Factor Family AT3G23060 35.135 4.50e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01995 K10695 - gmx:100776547 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01995 07 17410981 17416029 Bva07g01995 07 17410981 17416029 ECH