Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01980 ATGGCTTCTTTATTCAAGGATCCTGCCAAGCTTTCGGCATATCGAGATAGAAGATTTCCTGGATCACAAGAGGAATTTGAACATGCACTTCAGACATCAGCAACAGCTTATGTGGGAAATATGTCCTTTTACACTACAGAAGAACAAGTTTATGAACTTTTTTCCCGAGCcggagaaataaagaaaatcattatGGGCTTGGATAAGAACTCAAAAACACCTTGCGGCTTTTGCTTTGTTGTATATTACTCTCGGGAAGATACAGAGGATGCTGTCAAATATATAAGTGGGACAATACTTGATGATCGTCCTATTCGTGTTGATTTTGACTGGGGATTCCTTGAAGGTCGACAATGGGGTCGTGGCCGTAGTGGCGGGCAGGTGCGTGATGAATATCGAACAGATTATGATCCTGGTAGAGGTGGTTACGGGAAGTTAGTTCAGAAAGAGTTGGAAGCACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCATTGGGCTCTTTCCCACCAGTTATGCCACATTCCTATGGAAGACATGGCGGAGGCCATGGTCATGGTGGCTCTCATCGGCAAGGCAGAGATTACTATCGGAAGAGACAGAGAGATGACGACCGCCATGCACACGAGCCCTCTAAAAGAACATCAGATCATGAATCTCGGAGGAACTCTGATCATGACTCTAGACCAGAGAAAAATCCACGATTTCGTGAGAGTGGTGATTCAGATGATGACGAGGATGAGGATCGAAAGAGGCGATCTTA 761 0.4402 MASLFKDPAKLSAYRDRRFPGSQEEFEHALQTSATAYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVVYYSREDTEDAVKYISGTILDDRPIRVDFDWGFLEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGAGSLGSFPPVMPHSYGRHGGGHGHGGSHRQGRDYYRKRQRDDDRHAHEPSKRTSDHESRRNSDHDSRPEKNPRFRESGDSDDDEDEDRKRRS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01980 253 Gene3D - 6 150 IPR012677 -
Bva07g01980 253 SMART rrm1_1 35 108 IPR000504 GO:0003723
Bva07g01980 253 MobiDBLite consensus disorder prediction 171 253 - -
Bva07g01980 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 106 IPR000504 GO:0003723
Bva07g01980 253 MobiDBLite consensus disorder prediction 124 138 - -
Bva07g01980 253 MobiDBLite consensus disorder prediction 122 141 - -
Bva07g01980 253 MobiDBLite consensus disorder prediction 187 253 - -
Bva07g01980 253 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 161 IPR027157 GO:0000339|GO:0005846|GO:0045292
Bva07g01980 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Bva07g01980 253 SUPERFAMILY RNA-binding domain, RBD 23 144 IPR035979 GO:0003676
Bva07g01980 253 CDD RRM_NCBP2 37 113 IPR034148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01980 Bva-Chr7 17350763 17353949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01980 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 26.582 5.11e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01980 K12883 - gmx:100789535 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01980 07 17350763 17353949 Bva07g01980 07 17350763 17353949 ECH