Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01824 ATGATAGACCCCATGGACTTGCTTCGATCGAAACTTTCCCGGGTTCGGATTCCAGAACCCACCAATCGTATCTACAAGCAAGAATGCTGCTTATCCTTCGAAACTCCGAGGTCAGAAGGTGGACTATTCATTGACATGTGCACCTTTCTTGCTTTCGGGAAGGATTATGTGGGTTGGAATTATGAGAAGACTGGAAATCCTGTTTATCTTCATATAAAGctgacaaaaaaattagttcCTGAAGACAGGCCTTCAAAGAAACCAACGCTATTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGAACCTGAGCATGAAGAAACTCACAGTATAATTATATTGCCTGACTATGcatctcttccttttccttcagTGGAATTGCCTGAGAAGGTAAGGTTGGCTGCTGATGCTATCATACATACTGAGGGTGCTGAACGAAAAGAACAACTTGCAGCTTGGACTGTTGATAAGAAGCAAACCAGTGCCTATGCGGAGAATTTACAGCAGATTGACAATGGTGTTATCATTCCTCCATCTGGGTGGAAATGTGCTAAGTGTGAGAAGACAGACAATCTTTGGCTAAATCTGACAGATGGAATGATCCTTTGTGGGAGGAAAAACTGGGATGGAACTGGTGGCAACAACCATGCAGTTGAACACTATAAGGAGACAGGTTATCCTCTTGCTGTAAAGCTTGGGACCATCACTGCTGATTTGGAAGCAGCAGATGTTTACTCCTATCCCGAGGATGACAGTGTTTTGGATCCACTTTTAGCACAGCATTTGGCATTTTTTGGCATTGACTTTTCATCGCTTCAAAAGACTGAAATGACAACTGCTGAAAGAGAACTGGACCAAAATACCAATTTTGATTGGAATCGAATCCAAGAAAGTGGAGAGGAAGTGGAACCTCTTTTTGGACCTGGATATACAGGGTTGGTCAATCTTGGGAACAGctgTTACTTGGCAGCAACTATGCAAGTTGTGTTTTCTACAAGATCCTTCACTGCACGGTATTACATGAACCAAAATCTAAAGAAGGCGTTTGAGGTGGCTCCTGCTGATCCAACTGTAGACCTGAATATGCAGTTGACAAAATTGGCTCATGGTTTACTATCTGGTAAATATTCTGTTCCTGCATTGGAGAATAATGAAAAGGCAAATGCGGCTACACCAACTACCACTGCTAAGCAGGAAGGGATACCCCCACGCATGTTCAAAGCTGTAATTGCTGCTAGCCACCCTGAATTTACATCTATGAGGCAACAGGATGCTTTGGAATTTTTCCTGCATTTTCTTGACCAAGTTGAACGGGCTAATGCCGTAAGTCCTGTACTGGATCCCGCAAGGAGTTTCAAGTTTGGCATTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCATATAATAGAAGGCATGACTACATTCTTTCTCTTAATATTCCTCTTCATGAAGCGACTAATAAAGGAGAATTAGAGGCCTTTAACAAAATGAGAGCAGAGAAACTTGCTGAAGGAAAGGAAGTGTCTGGCGATGAGATTGTTCGTCCAAGGGTGCCCTTGGAAGCTTGCCTTGCGAGCTTCTCAGCTCCTGAGGAGATACATGATTTTTACAGCACTGCCTTAAAGGCAAAGACAACAGCCCTGAAGACAGCAGGTCTAACCTCATTCCCTGATTACCTGGTGTTACACATGCGAAAATTTGTTATGGAGGCAGGCTGGGTACCCAAAAAGCTTgATGTCTATGTAGATGTTCCTGATATCATAGATATTAGTCATATGCGGGGCAAAGGTCACCAAGTTGGGGAAGAGCTGTTACCAGATGGAGTTCCTGAGAAGGAGGAATCAAGTATACCTTCGGCCAATGAAGATATTGTTGCGCAGCTGGTCTCAATGGGCTTTAACCATCTTCACTGTCAGAAAGCTGCGATATACACCTCAAATGCCGGAATAGAAGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCGGATATCAACAATCCTATTTCTGATGGGCATAAATCTGAAACTTCGTCAAATATTGACCAATCAAAAGTTGATACTTTAATTTCATTCGGATTTCAAGAAGAAATTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAGCAATCCTGAAGCATCTGTTTCCAGCATGGATGCTACTACCTCCGACACTCAACCTGTTCCCAGTGTTGCTGACTTACCTGACGGAGGGGGGAggTATCGACTTGTTGGAATTGTTAGTCACATAGGGACTTCTACTCAGTGTGGTCACTATGTTGCCCACGTTGTCAAAGACGGTAGATGGGTTATCTTCAACGACAACAAGGTTGCGGCTTCCATTAATCCTCCCAAGGACATGGGCTATCTCTATTTCTTCGAGAGGCTTGGTAGTTG 2435 0.4255 MIDPMDLLRSKLSRVRIPEPTNRIYKQECCLSFETPRSEGGLFIDMCTFLAFGKDYVGWNYEKTGNPVYLHIKLTKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEHEETHSIIILPDYASLPFPSVELPEKVRLAADAIIHTEGAERKEQLAAWTVDKKQTSAYAENLQQIDNGVIIPPSGWKCAKCEKTDNLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETGYPLAVKLGTITADLEAADVYSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGEEVEPLFGPGYTGLVNLGNSCYLAATMQVVFSTRSFTARYYMNQNLKKAFEVAPADPTVDLNMQLTKLAHGLLSGKYSVPALENNEKANAATPTTTAKQEGIPPRMFKAVIAASHPEFTSMRQQDALEFFLHFLDQVERANAVSPVLDPARSFKFGIEDRILCSSGKVAYNRRHDYILSLNIPLHEATNKGELEAFNKMRAEKLAEGKEVSGDEIVRPRVPLEACLASFSAPEEIHDFYSTALKAKTTALKTAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYVDVPDIIDISHMRGKGHQVGEELLPDGVPEKEESSIPSANEDIVAQLVSMGFNHLHCQKAAIYTSNAGIEEAMNWLLSHMDDPDINNPISDGHKSETSSNIDQSKVDTLISFGFQEEIARKALKASGGDIEKATDWIFSNPEASVSSMDATTSDTQPVPSVADLPDGGGRYRLVGIVSHIGTSTQCGHYVAHVVKDGRWVIFNDNKVAASINPPKDMGYLYFFERLGS 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01824 811 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Bva07g01824 811 SUPERFAMILY UBA-like 678 726 IPR009060 GO:0005515
Bva07g01824 811 CDD Peptidase_C19B 313 807 - -
Bva07g01824 811 Gene3D - 677 738 - -
Bva07g01824 811 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 809 IPR028889 -
Bva07g01824 811 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270
Bva07g01824 811 Gene3D - 605 676 - -
Bva07g01824 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 809 - -
Bva07g01824 811 CDD UBA1_atUBP14 623 667 - -
Bva07g01824 811 Pfam UBA/TS-N domain 684 720 IPR015940 -
Bva07g01824 811 Pfam UBA/TS-N domain 623 659 IPR015940 -
Bva07g01824 811 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Bva07g01824 811 CDD UBA2_atUBP14 687 724 - -
Bva07g01824 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 754 772 IPR018200 GO:0004843|GO:0006511
Bva07g01824 811 SUPERFAMILY Cysteine proteinases 308 809 IPR038765 -
Bva07g01824 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Bva07g01824 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 621 662 IPR015940 -
Bva07g01824 811 SUPERFAMILY RING/U-box 162 270 - -
Bva07g01824 811 PIRSF UBP 5 810 IPR016652 GO:0004843|GO:0016579
Bva07g01824 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Bva07g01824 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 683 723 IPR015940 -
Bva07g01824 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 809 - -
Bva07g01824 811 SMART uba_6 685 722 IPR015940 -
Bva07g01824 811 SMART uba_6 623 661 IPR015940 -
Bva07g01824 811 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Bva07g01824 811 Pfam Ubiquitin carboxyl-terminal hydrolase 312 806 IPR001394 GO:0004843|GO:0016579
Bva07g01824 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 257 IPR013083 -
Bva07g01824 811 Gene3D Cysteine proteinases 305 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01824 Bva-Chr7 16549734 16556810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01824 615 669 C2H2 Transcription Factor Family AT1G04850 36.364 2.93e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01824 K11836 - gmx:100805602 1389.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01824 07 16549734 16556810 Bva07g01824 07 16549734 16556810 ECH