Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01728 ATGGCTCCGAGAGATAAAACCGCGTCTGTCGCCGGATCCAACCCGACCCATAACGCCAAAGAGATCCGATATAGAGGCGTCAGGAAGAGGCCTTGGGGCCGCTATGCTGCTGAGATCCGTGACCCAGGGAAGAAGACTCGGGTATGGCTTGGCACCTTTGACACCGCCGAGGAGGCGGCGCGTGCTTACGACGCCGCTGCCAGGGAGTTCCGTGGCGTCAAGGCCAAAACTAATTTCCCAACCCCATCTGAACTCGTAAATAACTCTGTTCATAGTCCTAGCCAGAGCTCCACCGTCGACTCAGCGTCTCCGCCGCCACCTCCTCCCCCTGCGCTCGACCTTTCACTCTCTCCACTCTCCGCCGCCGGCGCACTAGCGTTTCCGGTGATGACGGTGGCACGACCCGTGATATTTTTTGATGCTTTTGCTTGTACGGATAACATGATTAACGTTGGACGCCGTGAGATGTGTGCTTTTGATAAACCCGTAGTCGATTTCCGTCATGCTGTTCGTGGCGGCGATGGGGCCCAGAGTGACTCTGAATCATCCTCCGTCGTGAACTGCGAGCGTCTCCCACCGCAAAGACTCTTAGATCTTGACCTCAATGTCCCTCCTCTCCCGGAGGTTGCTTG 632 0.5696 MAPRDKTASVAGSNPTHNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGVKAKTNFPTPSELVNNSVHSPSQSSTVDSASPPPPPPPALDLSLSPLSAAGALAFPVMTVARPVIFFDAFACTDNMINVGRREMCAFDKPVVDFRHAVRGGDGAQSDSESSSVVNCERLPPQRLLDLDLNVPPLPEVA 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01728 210 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Bva07g01728 210 MobiDBLite consensus disorder prediction 81 99 - -
Bva07g01728 210 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Bva07g01728 210 MobiDBLite consensus disorder prediction 81 111 - -
Bva07g01728 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 190 - -
Bva07g01728 210 PANTHER ERF FAMILY PROTEIN 1 190 - -
Bva07g01728 210 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Bva07g01728 210 MobiDBLite consensus disorder prediction 1 27 - -
Bva07g01728 210 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Bva07g01728 210 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Bva07g01728 210 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Bva07g01728 210 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Bva07g01728 210 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01728 Bva-Chr7 16072171 16073170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01728 11 177 AP2-EREBP Transcription Factor Family AT3G15210 56.452 4.38e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva07g01728 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01728 K09286 - gmx:100500601 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00887 09 4573901 4574990 Bva07g01728 07 16072171 16073170 ECH
Bva09g00647 09 3371725 3372621 Bva07g01728 07 16072171 16073170 ECH
Bva07g01989 07 17380565 17381455 Bva07g01728 07 16072171 16073170 ECH
Bva07g01728 07 16072171 16073170 Bva14g01411 14 7038459 7039524 ECH
Bva07g01728 07 16072171 16073170 Bva13g01161 13 5799304 5800383 ECH
Bva07g01728 07 16072171 16073170 Bva07g01728 07 16072171 16073170 ECH