Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01717 ATGGaggatttcttcttttccttccaaAACCAGAAGCACCCAGAAGGAAAACAGAACAAGAAGAGGTTAACAGAAGAGCAAGTGAGCATCTTGGAGAAGAGTTTTGTCTCCAACAACAACAAGAAGCTCGAACCAGAACGAAAGTTTCAGCTGGCAAGTCAACTGGGCGTCCCTGCAAGACAGGTTGCAATATGGTTCCAGAACAAGCGAGCTCGCTGGAAGACTCAGAGCCTTGAGCTGGAACACGGTGCTCTTCAGTTGAAGCTTGAGAGTGTGTTGTCTGAAAAGAGAAAGCTAGAGAAAGAGGTGGAAAGGCTTAAGGCAGAGCTGAACAAGGCACAAGAAATGTTGGTTGGCATCAAAGGTGGAGATCAGAATGCTGCTTTCTCTGAATTTTCAGTGTCTTGTGAAGAGGGAGGGAGTTCTGGGTGTGATGCCAATAATGGGTTTTGGCAGAGTGGTGAGGTTTTGCAGGTTGAGGATCTTTATGCTTGTTACATGAGTGCCAAAGGGTCAAGATTGGATTG 527 0.4459 MEDFFFSFQNQKHPEGKQNKKRLTEEQVSILEKSFVSNNNKKLEPERKFQLASQLGVPARQVAIWFQNKRARWKTQSLELEHGALQLKLESVLSEKRKLEKEVERLKAELNKAQEMLVGIKGGDQNAAFSEFSVSCEEGGSSGCDANNGFWQSGEVLQVEDLYACYMSAKGSRLD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01717 175 ProSiteProfiles 'Homeobox' domain profile. 14 76 IPR001356 GO:0003677
Bva07g01717 175 CDD homeodomain 17 77 IPR001356 GO:0003677
Bva07g01717 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 170 IPR045224 GO:0003700
Bva07g01717 175 SUPERFAMILY Homeodomain-like 16 83 IPR009057 -
Bva07g01717 175 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Bva07g01717 175 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677
Bva07g01717 175 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677
Bva07g01717 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 9 170 - -
Bva07g01717 175 SMART HOX_1 16 80 IPR001356 GO:0003677
Bva07g01717 175 MobiDBLite consensus disorder prediction 1 23 - -
Bva07g01717 175 Pfam Homeodomain 18 74 IPR001356 GO:0003677
Bva07g01717 175 Coils Coil 82 116 - -
Bva07g01717 175 Gene3D - 8 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01717 Bva-Chr7 16008734 16009389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01717 15 168 Homeobox Transcription Factor Family AT5G53980 46.104 6.93e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva07g01717 Homeodomain 7.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01717 - - gmx:100781030 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00891 09 4611433 4611954 Bva07g01717 07 16008734 16009389 ECH
Bva07g01717 07 16008734 16009389 Bva07g01717 07 16008734 16009389 ECH