Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01653 ATGTCTCTGAGGAATGTTTTTCGTTCTCGTAAATTTTCCAGATCCTTCAAGGAAGTTAGAGCCCTTGATGAAGATGAGCGGAGGAACCGACTCGGTGGTGGTGACGCGGACGATGATTCCGGCGAGTCTGGTCAGGTCGCCGCTGCGTACGGCAATGCATGGTCCTCCATGCTGCCGGAGCTCCTCGGGGAGATCATAAAGCGAGTGGAGGCCGGCCAGGAGCAGTGGCCCCATCGCCAAAACGTTGTCTCTTTTTCCTGCGTGTGCAAAAGGTGGAGGGAACTGACTCTGGATATCGTACGGGCCCCTTCCCAGAGCGGCAAAATCACTTTCCCTTCTTGTCTTAAACAGCCAGGGCCTCGTGATTCTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAacgttttatttatatcttgcCCTTACACCATCATTCACAGATAAAGGGAAGTTCCTCTTAGCAGCTAGGAGATATAGGAGAGGTGTCCATACGGAGTATATAATATCACTGGATGATGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAATTTCACAATCTATGACAGCCAGCCACCCCATAATGGTGCAAAGCCATCAAGCAACAGGGCCAGCCGCCGTTTTGCTAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGCAACTTTGAGGTGGGGCAGGTCTCATACAAGTTCAACCTTTTAAAATCAAGAGGGCCTAGGAGGATGATTTGCTCGTTGAAATGTCCTGCCCCTTCATCAGGAGAAAGTCCAGATGGTAAATCACTGGACGACCATAATGTAAACGATAAAGAACAAGCAACTACCAGCTactcaattttgaaaaataaagctCCAAGGTGGCACGAGCACTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTAGCATCAGTTAAGAACTTTCAGCTAGTTGCAACTGTGGACCAAAGCCAGCCAGGAGGGAAAGGAGACGAGGAAACGGTCCTCCTCCAGTTTGGCAAAGTAGGAGATGATACATTCACTATGGATTATAGGCAGCCCTTATCCGCCTTCCAGGCTTTCGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCGTGCGAgta 1148 0.4765 MSLRNVFRSRKFSRSFKEVRALDEDERRNRLGGGDADDDSGESGQVAAAYGNAWSSMLPELLGEIIKRVEAGQEQWPHRQNVVSFSCVCKRWRELTLDIVRAPSQSGKITFPSCLKQPGPRDSPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRRGVHTEYIISLDDDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSNRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPAPSSGESPDGKSLDDHNVNDKEQATTSYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01653 382 Pfam Tub family 115 377 IPR000007 -
Bva07g01653 382 ProSitePatterns Tub family signature 2. 367 382 IPR018066 -
Bva07g01653 382 Pfam F-box domain 54 100 IPR001810 GO:0005515
Bva07g01653 382 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Bva07g01653 382 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Bva07g01653 382 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Bva07g01653 382 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Bva07g01653 382 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Bva07g01653 382 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Bva07g01653 382 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Bva07g01653 382 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Bva07g01653 382 MobiDBLite consensus disorder prediction 260 279 - -
Bva07g01653 382 PANTHER TUBBY-RELATED 1 382 - -
Bva07g01653 382 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 382 - -
Bva07g01653 382 Gene3D Tubby Protein; Chain A 110 382 IPR025659 -
Bva07g01653 382 SUPERFAMILY Tubby C-terminal domain-like 103 382 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01653 Bva-Chr7 15707202 15710858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01653 49 382 TUB Transcription Factor Family AT1G53320 78.592 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva07g01653 Tub 9.9e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01653 K19600 - gmx:100808096 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01653 07 15707202 15710858 Bva07g01653 07 15707202 15710858 ECH