Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01571 ATGGATGCTAGGTTCCACGGCTTACCTCCTCTGAAACGATTGAGAATCATACaacaagaagaacaaaagCTTCAGCAACAGCAGCAACAAAGAAGACCGTTACCCACAAAAAAGCGAAGGGAGACTTGGGACTCAACATTTCTGCCAGACCCACCAGTTTCTGCGTCTCCCACTGCTTACTCTTTGCCTGCTAAGAAAAGGGTATGGGCGCTTCAACCTGAATCTACTCCTACTTTAGCTGTTTCTGAATCTCTCTTTGATCTCAATGTTGAATATAAACCATCTGTTGAGGAAGAGATTGACCCGGTAGATCTTGAACCCAATAACGAGATCCCAGTAGTAGTAGATTCAGCTAATCAATCTATTGAAAACCCCcaagatgaaaatgaagaagataaaagagaagacaTTGATGGTGATGAAGATGACGATGACGGGGTCTTATGCACCGTATGTGGAAGCTCAGATGGTGACCCCACGGATCCAATTGTTTTCTGCGATGGGTGTGATTTAATGGTGCACACCACCTGCTATGGCAATCCCCTTGTAAAGGGTGTACCAGAAGGTGATTGGTTCTGTAGTGAATGCCTTGCTTCGTCGTCTTCTAAATCTGAGAAGGGTGATAAGGGTTTTTCTTGCTGCCTCTGCCCTATCAAGGAGGGGGCAATGAAACCCACAACGGATGGGAAGTGGGCGCATATTGTCTGTGCGCTTTTAGTCCCTGAGGTGTTTTTCAGAGACCCAGAAGGCAGAGAGGAGATTGATTGTTCTCAGGTTCCCAACAAGAGGTGGATGGAGAAATGTTACATTTGCAATTCTTTGAATGGGTGTGCTATAGTGTGCTCCGAGTCAAAATGCTCTTTAGCTTTCCATGTTACTTGTGGATTGAAAGAGGATCTCAGCATTGAGTACAAAGAAGGGAAGAGTGCTACTATTGTTGCTGGTTTTTGCAAAACCCATACTGAAGTATGGaagaagCAACAGCAATCTgggaaatataaaatagttgcTGCCTCATA 1019 0.42 MDARFHGLPPLKRLRIIQQEEQKLQQQQQQRRPLPTKKRRETWDSTFLPDPPVSASPTAYSLPAKKRVWALQPESTPTLAVSESLFDLNVEYKPSVEEEIDPVDLEPNNEIPVVVDSANQSIENPQDENEEDKREDIDGDEDDDDGVLCTVCGSSDGDPTDPIVFCDGCDLMVHTTCYGNPLVKGVPEGDWFCSECLASSSSKSEKGDKGFSCCLCPIKEGAMKPTTDGKWAHIVCALLVPEVFFRDPEGREEIDCSQVPNKRWMEKCYICNSLNGCAIVCSESKCSLAFHVTCGLKEDLSIEYKEGKSATIVAGFCKTHTEVWKKQQQSGKYKIVAAS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01571 339 PANTHER PHD FINGER PROTEINS 127 329 - -
Bva07g01571 339 PANTHER PHD FINGER PROTEINS 3 132 - -
Bva07g01571 339 CDD PHD_BRPF_JADE_like 148 196 - -
Bva07g01571 339 SUPERFAMILY FYVE/PHD zinc finger 138 203 IPR011011 -
Bva07g01571 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 323 IPR013083 -
Bva07g01571 339 MobiDBLite consensus disorder prediction 116 145 - -
Bva07g01571 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 132 - -
Bva07g01571 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 209 IPR013083 -
Bva07g01571 339 ProSiteProfiles Zinc finger PHD-type profile. 146 199 IPR019787 -
Bva07g01571 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 210 321 IPR034732 -
Bva07g01571 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 127 329 - -
Bva07g01571 339 MobiDBLite consensus disorder prediction 1 59 - -
Bva07g01571 339 Pfam PHD-finger 149 197 IPR019787 -
Bva07g01571 339 MobiDBLite consensus disorder prediction 129 145 - -
Bva07g01571 339 SMART PHD_3 148 197 IPR001965 -
Bva07g01571 339 SMART PHD_3 267 321 IPR001965 -
Bva07g01571 339 Pfam PHD-zinc-finger like domain 212 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01571 Bva-Chr7 15221072 15222615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01571 1 337 C2H2 Transcription Factor Family AT3G14740 51.685 1.13e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva07g01571 zf-HC5HC2H_2 7.7e-30 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01571 K11380 - fve:101296758 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01571 07 15221072 15222615 Bva07g01571 07 15221072 15222615 ECH