Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01473 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCGCCTTCGGGCTCCGATTCGGCCTCCTCCTCTCGTTCTAGGTCCTCCTCTCGCTCCAGCTCTCGTTCGCTTTCTCGGCCTAGACCTCGGGCCCGGTCCCGTTCCCCTTCCAAGTCACCATCCTCTTCACGCTCTCTTTCCCGTTCCAGATCCTTGTCTTCGTCGTCTTCTCGGTCCCGCAGGGACAGTTCTAGGAGCAGGAGCCCTCGTCCTCTTAGGAGAAGAACTCCTGCTGAAGCAATTAGGCGAGGACGGTCTCCCCCGCCCCAGTCTAAAAGGACATCTCCACCACCAAGAAAACAATCTCCAGTTCGTGAATCTGTTGTTCTTCACATAGACAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAGAGAAATATTCAGTAACTTTGGTGAGGTCGTGAATGTGGAGCTGGTAATGGATCGAACTGTTAATCTTCCAAGAGGATATGGTTATGTAGAGTTTAAGACAAAGGAAGATGCTGAAAAAGCCTTATTATACATGGATGGTGGTCAAATAGATGGGAATATCATTAAGGCGAGATTTACTCTACCTCCAAGACAACGGGTCTCACCACCCCCAAAGGCATCAGCTGTCGCTCCAAAGAGAGATGCCCCCAGAACTGATAATGTTAGTGCAGATGCTGAAAAGGATGGTCCAAAACGACAAACGGAACCTTCTCCTCGAAGAAAACCTTCCTCACCACAAAGGAGATCTCCTGGTCCTCGAAGAGTTGGATCTCCAAGTCGGCCAGATTCTCCTGTTCGTCTGCGTCGTCGATTGGACTCTCCATATCGTCGTGGAGAAATTCCTCCTAGGAGGAGGCCTTTGTCTCCTGCAAGAGGCCGTTCTCCATCTCCACCCAGGCGCATGAGATCCCCTGCAAGAAGGTTGCGTGGAAGTCCAGGTCGCAGACGAACGCCTCCAAGGCGCCGTTCCCCATTTAGACGAGCTCATAGTCCTCCTAGAAGGTCCCCTCCCAGTCGTAGACGCACACGCTCTCCAATACGTAGGCCTGCACGCGCACGTTCAAGATCATTCTCACCACCCCGAAGAGGTCGACCACCTGTAAGGCGTGGAAGCTCGTCATCCTCCTCTGGTTCACCAAGTCCGCGCAAGGTATCACGGAGATCAAGGAGTCGCAGTCCAAAAAGgcCTTTGAGAAGGAGAGGCAGTAGCaatagcagcagcagcagctcACCACCCCCACCTCGCAGACCATA 1256 0.5207 MAKPGRGRRSPPSGSDSASSSRSRSSSRSSSRSLSRPRPRARSRSPSKSPSSSRSLSRSRSLSSSSSRSRRDSSRSRSPRPLRRRTPAEAIRRGRSPPPQSKRTSPPPRKQSPVRESVVLHIDKLSRNVNEGHLREIFSNFGEVVNVELVMDRTVNLPRGYGYVEFKTKEDAEKALLYMDGGQIDGNIIKARFTLPPRQRVSPPPKASAVAPKRDAPRTDNVSADAEKDGPKRQTEPSPRRKPSSPQRRSPGPRRVGSPSRPDSPVRLRRRLDSPYRRGEIPPRRRPLSPARGRSPSPPRRMRSPARRLRGSPGRRRTPPRRRSPFRRAHSPPRRSPPSRRRTRSPIRRPARARSRSFSPPRRGRPPVRRGSSSSSSGSPSPRKVSRRSRSRSPKRPLRRRGSSNSSSSSSPPPPRRP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01473 418 MobiDBLite consensus disorder prediction 264 287 - -
Bva07g01473 418 MobiDBLite consensus disorder prediction 1 116 - -
Bva07g01473 418 MobiDBLite consensus disorder prediction 301 359 - -
Bva07g01473 418 Gene3D - 5 202 IPR012677 -
Bva07g01473 418 SUPERFAMILY RNA-binding domain, RBD 105 204 IPR035979 GO:0003676
Bva07g01473 418 SMART rrm1_1 119 192 IPR000504 GO:0003723
Bva07g01473 418 MobiDBLite consensus disorder prediction 195 418 - -
Bva07g01473 418 CDD RRM_RNPS1 120 192 IPR034201 -
Bva07g01473 418 PANTHER BNAA09G56240D PROTEIN 43 400 - -
Bva07g01473 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Bva07g01473 418 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 43 400 - -
Bva07g01473 418 MobiDBLite consensus disorder prediction 12 34 - -
Bva07g01473 418 MobiDBLite consensus disorder prediction 385 399 - -
Bva07g01473 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 189 IPR000504 GO:0003723
Bva07g01473 418 MobiDBLite consensus disorder prediction 218 243 - -
Bva07g01473 418 MobiDBLite consensus disorder prediction 369 384 - -
Bva07g01473 418 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01473 Bva-Chr7 14706695 14711448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01473 120 193 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 5.42e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01473 K14325 - gmx:100783566 281.567