LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva07g01450	ATGAGGCAAGGCCCCAAGGGCCACCACCACCATCGACAATGGGGGCTCTCTCTCTTCGAGAAGGAAACTTTTGAATTTGGTCAGAAAGTGAGGCATCATCGTCTTAGCTGGTGGCTCTGCATAATCCTCAAGAGCCTACAAgctggttttctttttccctgtGTTAATTGTTGGGTTGAAGCTCAAGTAATTAAAGGTGGCAACTTTGATATCAAGTTGAAGCTCAAGCTCAATATGGTGAGGTCTTCAGCACTGGTTGGTTTTGCAGTTGCAGCTGTTTTTATCTTCAACTTAGCAGAAGCTCAAGATGCGAACGCCACTACAGATCCTGCTGAAGCGAGAGCTTTGAACtcaattttcaacaaatgGGGGATACTAGCATCTACTGTACAATCAAATGGATGGAATGTAAGCGGCGAGCTATGCAGCGGAAGAGCCACTGACGACACCGTAATTGATGACCAAAACTACAATCCATTAATCAAATGCAGTTGTTCCTTTGACAACGCCACTACTTGCCGCATTACAGCGTTAAAGGTTTATGCTTTGGATGTGGTTGGTGAAATCCCAGAAGAGCTATGGACTCTGACTTACCTCACCAATCTAAATCTGGGCCAGAATTACTTGACAGGTTCTCTACCTCCAGCAATAGGAAACCTTACACGAATGCAATACATGTCCCTTGGCATCAATGCCTTATCAGGGGAGCTTCCAAAGGAACTGGGAAATCTTACTGAGTTAATAGTATTGGGTTTTGGGTCAAACAAATTCAATGGTTCTCTCCCATCTGAACTTGGGAAGCTGGTGAAATTAGAACAACTATACTTTGATAGTTCCGGAATCAGTGGTCCAATTCCTACAACATTTGCAAATCTAATCAACCTGGGCAATGTATGGGCATCAGACATGGAATTCACAGGCAGGATACCCGACTTCATAGGGAACTTTACTAAGCTGACAGTCTTGAGGTTTCAGGGTAATTCTTTTGAAGGCTCAATACCCTCGTCATTTTCCAATTTGACTTCTCTGACAGAGTTGAGAATAAGTGGCTTATCTAATGGGAGCTCCTCGCTGgaatttataagaaatatgaAGTCTTTGACCATCTTAGAACTGCGGAATAACAACATTACTGGTTCGATTCCATCCTATATTggtgaattttcaaatttgacaCAGCTGGATTTAAGCTTCAATAATATTACAGGAGAGATTCCAGCCTCGCTTTTCAACTTGAGTCAGCTTTCTCATTTGTTTCTTGGGAATAACCAACTTAATGGTACCATCCCTACTCAGAAAAGTGCTTCTCTTCTCAATATAGACTTGTCGTACAACAATCTATCAGGGAGCTTGTCCTCGTGGGTCAATGAACAAAATTTGCAACTCAATTTAGTTGCCAACAACTTGACAATAGAAAGTTCAACTAGCAGTGGTTTGCCTTCTGGACTCAACTGTCTCCAGCGAAATTTTCCTTGCAATCGTGGCACTGGAAGATATTATAACTTTGCAATCAAGTGTGGTGGTCCTCAAATTACATCCTCAAGTGGAGTCGTATATGAAAGGGATAATGACACGCTTGGTCCAGCAACATATTATGTTAAAGATACCGACAGATGGGCTGTTAGCAATGTTGGGTTATTTACTGGGAACAACAATCCTCAATACAAAAGTACTGTGACTAATCAGTTCACTAATACTCTGGACTCAGAGCTCTTCCAGACAGCACGGCTCTCAGCTTCATCCTTAAGATACTATGGCCTGGGCCTGGAAAATGGTAACTACAACATCACACTCCAGTTTGCAGAGACATCTATTCTGGGTACTGCTACCACATGGAAAAGTCTTGGGAGGAGGgtctttgatatttatatccaGGGGAATCTTGTTTTGAAGGATTTTGACATACAAAGGGAAGCTGGGGGTGTCTCTTACAGAGCTGTCCAAAAAGAATTCAGGGTTCCAGTGACAGAAAACTATCTCGAGGTCCATCTTTTCTGGGCTGGAAAAGGGACTTGCTGTATACCAGCTCAAGGTACTTATGGTCCTCTGATTCAAGCTATCAATGCAATTCCAGATTTCATACCCACTGTTAGTAATGAAACTCCGACAAGCTCTGAGAATGACAAAACCGGTCTCATTGTGGGAATTGCTGTTGGTGTTGGAGTGGTGTGCTTTCTGTCTGTTTTCATACTTTGGTTTATcattcaaagaagaaagcGTCGTAGAGGTGATGATGAAGagCTCTTAGGTATTGACACAAAGCCATATACGTTCAGCTATTCTGAGTTAAAGAATGCTACAGGTGACTTTGATCTTAACAACAAGCTTGGGGAGGGAGGTTTTGGACCAGTTTATAAGGGGACACTCAATGATGGAAGAGTGATTGCTGTGAAACAACTATCTGCAGGATCTCATCAAGGAAAAAGTCAGTTCATAACTGAGATTGCTACCATATCTGCAGTGCAACATCGTAATCTTGTTAAGTTATATGGATGTTGCATTGAAGGAGATGAAAGACTTCTTGTCTATGAATATCTAGAAAACAAGAGTCTCGATCAAGCATTATTTGGAAATgttttaaatctcaattggACTATGCGCTATGATATTTGCATGGGTGTTGCAAGAGGGTTAGCATATCTTCATGAGGAGTCACGGCTTCGTATAGTGCATCGTGATGTCAAGGCTAGTAATATTCTGCTTGATCATGAGCTTGTCCCAAAAATATCTGATTTTGGTTTAGCCAAATTATATGACGATAAGAAGACCCATATAAGCACTCGTGTGGCAGGGACTATTGGATATCTTGCACCGGAGTATGCTATGCGTGGCCATCTTACCGAGAAAGCAGATGTGTTTTCCTTTGGTGTCGTAGCTCTGGAATTAATTAGTGGCAGGCCAAATTCTGATTCAAGCTTGGAAGGAGATAAAGTGTATCTTCTGGAATGGgcTTGGAATATGTTTGAAAACAAAGGTGTAACCGAACTGGTAGATCCTAGACTATCAGAATTCAACGAAGAAGAGGTTAAGAGAATTGTTGGAGTAGCTCTTTTGTGCACTCAAACATCACCAGCATTGCGACCTTCAATGTCTCGTGTGGTGGCAATGCTCTCTGGAGATATTGAAGTGAGCCCTGTAACTTCAAGGCCAGGATACTTGACTGACTGGAAATTTGATGATGTGACCAGCTTAATGACTGACATTGCAACTAAAGGATCTGATTATAACTCATCATCAGCAAGCACCAGCATTGTTGGTGGCACAGATTTTTCACCAGTTAAACCTTCTAAACCCATGCTTGATAGATCTCTTCAGGGTAGGTA	3323	0.4063	MRQGPKGHHHHRQWGLSLFEKETFEFGQKVRHHRLSWWLCIILKSLQAGFLFPCVNCWVEAQVIKGGNFDIKLKLKLNMVRSSALVGFAVAAVFIFNLAEAQDANATTDPAEARALNSIFNKWGILASTVQSNGWNVSGELCSGRATDDTVIDDQNYNPLIKCSCSFDNATTCRITALKVYALDVVGEIPEELWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYMSLGINALSGELPKELGNLTELIVLGFGSNKFNGSLPSELGKLVKLEQLYFDSSGISGPIPTTFANLINLGNVWASDMEFTGRIPDFIGNFTKLTVLRFQGNSFEGSIPSSFSNLTSLTELRISGLSNGSSSLEFIRNMKSLTILELRNNNITGSIPSYIGEFSNLTQLDLSFNNITGEIPASLFNLSQLSHLFLGNNQLNGTIPTQKSASLLNIDLSYNNLSGSLSSWVNEQNLQLNLVANNLTIESSTSSGLPSGLNCLQRNFPCNRGTGRYYNFAIKCGGPQITSSSGVVYERDNDTLGPATYYVKDTDRWAVSNVGLFTGNNNPQYKSTVTNQFTNTLDSELFQTARLSASSLRYYGLGLENGNYNITLQFAETSILGTATTWKSLGRRVFDIYIQGNLVLKDFDIQREAGGVSYRAVQKEFRVPVTENYLEVHLFWAGKGTCCIPAQGTYGPLIQAINAIPDFIPTVSNETPTSSENDKTGLIVGIAVGVGVVCFLSVFILWFIIQRRKRRRGDDEELLGIDTKPYTFSYSELKNATGDFDLNNKLGEGGFGPVYKGTLNDGRVIAVKQLSAGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGDERLLVYEYLENKSLDQALFGNVLNLNWTMRYDICMGVARGLAYLHEESRLRIVHRDVKASNILLDHELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELISGRPNSDSSLEGDKVYLLEWAWNMFENKGVTELVDPRLSEFNEEEVKRIVGVALLCTQTSPALRPSMSRVVAMLSGDIEVSPVTSRPGYLTDWKFDDVTSLMTDIATKGSDYNSSSASTSIVGGTDFSPVKPSKPMLDRSLQGR	1107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva07g01450	1107	MobiDBLite	consensus disorder prediction	1072	1107	-	-
	Bva07g01450	1107	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	213	1092	-	-
	Bva07g01450	1107	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	889	901	IPR008271	GO:0004672\|GO:0006468
	Bva07g01450	1107	Pfam	Malectin domain	501	687	IPR021720	-
	Bva07g01450	1107	Gene3D	Ribonuclease Inhibitor	354	477	IPR032675	-
	Bva07g01450	1107	Gene3D	Ribonuclease Inhibitor	109	353	IPR032675	-
	Bva07g01450	1107	MobiDBLite	consensus disorder prediction	1072	1089	-	-
	Bva07g01450	1107	ProSiteProfiles	Leucine-rich repeat profile.	390	412	IPR001611	GO:0005515
	Bva07g01450	1107	SUPERFAMILY	L domain-like	172	473	-	-
	Bva07g01450	1107	Gene3D	Phosphorylase Kinase; domain 1	734	845	-	-
	Bva07g01450	1107	Gene3D	-	499	691	-	-
	Bva07g01450	1107	Pfam	Leucine rich repeat	366	425	IPR001611	GO:0005515
	Bva07g01450	1107	Gene3D	Transferase(Phosphotransferase) domain 1	846	1045	-	-
	Bva07g01450	1107	Pfam	Protein tyrosine and serine/threonine kinase	772	1037	IPR001245	GO:0004672\|GO:0006468
	Bva07g01450	1107	SMART	serkin_6	770	1037	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva07g01450	1107	ProSiteProfiles	Protein kinase domain profile.	770	1047	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva07g01450	1107	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	213	1092	-	-
	Bva07g01450	1107	CDD	STKc_IRAK	776	1037	-	-
	Bva07g01450	1107	SUPERFAMILY	Protein kinase-like (PK-like)	751	1037	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva07g01450	Bva-Chr7	14585571	14593347	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva07g01450	180	353	Receptor kinase-like Gene Family	AT1G56120	25.862	2.03e-09	60.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bva07g01450		PK_Tyr_Ser-Thr	5.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva07g01450	-		-	lang:109352863	1574.3