Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01435 ATGACCAGAGGCAAGGTGAAGCTTCAACTGATTGCCAATGAGTCAACGAGGCGTGCTGCCttcagaaagagaaagaagggtCTGCTGAAGAAGGTCGATGAACTGACCAAACTGTGTGGTGTTGAGATTGAATTGGCTGATTTGGATGACATGGGAGTGATGCTTGATCAGAAGCTGAGGAAAATCAGAGCAAGGTTGGAATCCCTGAATAAGGCTGAGGCTGAGAGCCAAGCTCAAGTTACTATCTG 248 0.4395 MTRGKVKLQLIANESTRRAAFRKRKKGLLKKVDELTKLCGVEIELADLDDMGVMLDQKLRKIRARLESLNKAEAESQAQVTI 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01435 82 Coils Coil 55 79 - -
Bva07g01435 82 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 44 IPR002100 GO:0003677|GO:0046983
Bva07g01435 82 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva07g01435 82 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Bva07g01435 82 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Bva07g01435 82 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 42 - -
Bva07g01435 82 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Bva07g01435 82 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva07g01435 82 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva07g01435 82 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva07g01435 82 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01435 Bva-Chr7 14507387 14507899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01435 1 82 Type I MADS-box Gene Family AT1G22590 42.353 3.39e-12 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g01435 SRF-TF 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01435 - - bvg:104890354 67.781