Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01412 ATGGAATCTTCTATAACAGAGACCAAGAAGCCCAAGGAATTTCTAGTGTACCAAAGAAGGGGAGGCAGTGGTTCTACTTCTGGAGAAACttcattaaacaaaaagaaagaaatttcatcaaagtCTGAGTCTTCTTTTGCTCAAAAAGATGGCAAGTTGAATTGGGAAATTGGAGAAGATGGACATTACTATGCATGTGTGCTGTGTGAGAAGGGGGGCAGGTTGATCTGCTGTGATTTTTGCCCTGCTACTTATCACCTCGGTTGCCTAAAATCTAAGATTGCTCCTAAGGGTAAATGGAAATGCCCCCAGTGTGAGCACGAAGAAGACTCAAAACCATTGATCGATCTCCTCAATGAAATAACTGCCAAGAAAAGGGCATCAGCCAAGAAACTAAAGAAAGACTCTTCGGAAGAGAGACCAGAGATATA 431 0.3991 MESSITETKKPKEFLVYQRRGGSGSTSGETSLNKKKEISSKSESSFAQKDGKLNWEIGEDGHYYACVLCEKGGRLICCDFCPATYHLGCLKSKIAPKGKWKCPQCEHEEDSKPLIDLLNEITAKKRASAKKLKKDSSEERPEI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01412 143 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 31 137 - -
Bva07g01412 143 ProSiteProfiles Zinc finger PHD-type profile. 63 108 IPR019787 -
Bva07g01412 143 PANTHER PROTEIN CHROMATIN REMODELING 4 31 137 - -
Bva07g01412 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Bva07g01412 143 SMART PHD_3 65 106 IPR001965 -
Bva07g01412 143 MobiDBLite consensus disorder prediction 1 48 - -
Bva07g01412 143 MobiDBLite consensus disorder prediction 1 16 - -
Bva07g01412 143 Pfam PHD-finger 66 107 IPR019787 -
Bva07g01412 143 SUPERFAMILY FYVE/PHD zinc finger 43 107 IPR011011 -
Bva07g01412 143 ProSitePatterns Zinc finger PHD-type signature. 66 105 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01412 Bva-Chr7 14407229 14408768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01412 65 105 PHD Transcription Factor Family AT1G05380 56.098 4.80e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva07g01412 PHD 4.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01412 - K11655 cic:CICLE_v10005433mg 89.3521