Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01389 ATGACTCAGCCATCGGTGCCTCCGCCGTTGGCCCCACAACTACCGCCGGTTCCCGGCGGTGTGCAAGTGCGTTGCGCGGGTTGCCGCATGATCTTGACCGTCGGGCCAGGAGTGACGGAGTTCGCTTGCCCTACCTGTCGTATGCCTCAGATGCTTCCCCCGGAACTGATGAGTAGGGCCCACCAGAGGCCGGTTCATTCGCCTTTACCTCCTCCGCCGCAGGTGCCGCAGCATGTGCCGGCGCACGGCATTGATCCCACCAAGATCCAGTTACCCTGTGCTAGCTGCAAGGCCATTCTCAATGTGCCTCATGGTCTCGCGAGGTTCGCTTGCCCGCAATGTGGGGTTGACCTCGCCGTCGATGTCTCCAAGTTAAACCAGTTTTTACCGTCTGGAGCTCCTCCCGAGGAAGTTAACGAGCTAGCTGTTGAAGTGGAGCGGGATGAAGACGAGGGTGGCATGGCTGGAGAAACATTTACAGATTATCGGCCTCCCAAATTATCTATTGGACCTCCTCACCCAGATCCCATTGTGGAGACATCTTCATTATCTGCAGTACAGCCACCTGAGCCTACTTATGATCCAAAAATTAAGGATAACTTGGAAAGTTCAAAGGCTTTGTCATGCTTGCAGATCGAGACATTGGTCTATGCTAGTCAGAGACAccttcatcatcttccaaaTGGTGCTAGGGCAGGATTCTTTCTTGGAGATGGGGCTGGTGTAGGAAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCACCATGGAAGGAGAAAAGCATTGTGGATATCCGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGATCTGGATGATGCAGGTGCAACTTGCATTGAAGTGCATGCTTTGAACAAACTTCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAAGGAGGGAGTTGTTTTCTTGACCTACAGTAGCCTCATAGCATCTTCTGAGAAAGGTCGATCTCGTCTCCAACAGCTGGTCCAGTGGTGTGGACCAGGGTTTGACGGACTTGTCATCTTTGATGAGTGTCATAAAGCAAAAAACTTGGTACCTGAATCTGGTAGTCAGCCAACACGAACGGGTGAAGCTGTTCTTGATATCCAGGCCCGACTACCTGAAGCTCGTGTTATTTATTGCTCAGCTACCGGTGCATCTGAACCTCGGAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCTTTTTCTGATTTCCGTGAATTTCTAGGTGCTCTTGAGAGAGGGGGTGTTGGAGCACTGGAACTAGTTGCCATGGATATGAAAGCAAGgggGATGTATGTATGCCGAACACTAAGTTACGAGGGTGTGGAATTTGAAGTTGTCGAAGCACCATTAGAAGATAAAATGGTGGACATGTATAAAAAGGCAGCAGAATTCTGGGCAGAATTGCGAGTTGAGTTACTGTCAACGAGTGCCTTCCTTAATGAGAAACCTAATTCTAGTCAACTATGGCGATTATATTGGGCAAGCCATCAGCGTTTCTTTAGACACATGTGTATGTCTGCCAAAGTTCCTGCTACTGTGAGACTGGCAAAGGAAGCATTAATGGAAGATAAATGTGTTGTAATTGGCCTTCAGAGTACTGGAGAAGCACGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACttgatgattttgtttctGGACCACGAGAATTgcttataaaatttgttgaagaaaattaCCCATTGCCAGAAAAACCTGAACTTCTACCAGGGGAGGATGGTGTAAAGGAGCTCCAGAGGAAGAGGCACTCAGCAACTCCTGGTGTTTCAATAAAAGGAAGGGTTAGAAAAGTTGCTAAGTGGCAACCTCCTAGTGATATTGAAAGTGAAGAAGAATCTGAAACTGACTCTGCTGAGGAATCTACTGAATCTGATGATGAGTTATTTCAGATATGCGAGATTTGCGCTACTGAGGAGgaaaggaagaaattgctTGAATGTTCCTGTTGTGGTAAATTGGTCCATCCAGCATGCTTGATACCCCCTATAAGTGATTTAGTTCCAGAAGAATGGTCGTGCCATTTgtgcaaagaaaaaacagatgAATATCTTCAAGCTAGACATGCCTACATAACTGAACTTCAGAAGAGGTATGATTCTGCCTTGGAAcgcaaaacaaaaatattggaGATTGTTCGATCTTTGGATCTTCCTAATAATCCTTTGGATGATATTATTGACCAGCTAGGAGGCCCTGAGAAAGTTGCAGAAATGACAGGAAGGAGAGGAATGCTTGTGAGAGCCGCTAACGGGAAAGGGGTTACTTATCAGGCTCGGAACACAAAGGATGTCACTATGGAGATGGTCAACATGCATGAGAAGCAACTCTTTATGGATGGCAAGAAGTCAGTGGCTATCATTTCGGAAGCTGGATCAGCTGGTGTGTCCTTGCAGGCAGATAGAAGAGCCATAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCTGACCGAGCAATACAGCAGTTTGGAAGAACTCATCGGTCAAATCAAGCTTCAGCACCAGAATACAGGTTACTTTTTACTAATCTTGGTGGAGAACGCCGATTTGCGTCAATTGTTGCAAAAAGATTAGAATCTCTTGGAGCTTTGACCCAGGGAGACCGCAGGGCTGGACCATCGTTGAGTGCTTATAATTACGACAGTGCATATGGAAAGAGGGCTCTGATGATTATGTATAAAGGAATTATGGAGCAGgaTATTCTGCCAGTTGTACCTCCAGGATGTATATCTGACAGACCAGATACAATCCAAGATTTTATTATGAAGGCGAAAGCTGCTCTCATATCTGTTGGAATAGTTAGGGATACAACTCTGgGTCATGGTAAAGATCTTGGAAGGTTCTCTGGCCGCATTATTGATTCAGACATGCATGACGTTGGACGATTCCTCAACCGGCTGTTGGGGTTACCTCCTGAGATTCAGAACAgGCTCTTCGAGTTATTTGTCAGTATCTTGGATCTTCTCATTCAGAATGCTCGTATTGAAGGTAACCTCGACACTGGCATTGTTGACATGAAAGCTAATGTTATTGAACTACATGGGACTCCAAAGacAGTCCATGTTGATCATATGACTGGGGCTTCAACTGTATTATTTACATTGATCTTGGATCGTGGGATCACATGGGAGCTGGCAAGTACCATGTTGAATGAAAAGCAGAAGGATGGACTTGGTTCAGCCTATGATGGCTTCTACGAGTCCAAGAGAGAGTGGTTGGGAAGACGTCATTTCATTTTGGCATTTGAAAGTTCTGCTTCTGGTATGTATAAGATAGTACGACCCCCTGTTGGAGAGTCACTTCGGGAGATGCCTCTGGCagaattaaaaagtaaatatagaaAAGTATCATCTCTAGAGAAGGCACAAACAGGTTGGGAAGATGAGTATGAAGTTTCATCTAAGCAGTGCATGCATGGTCCCAAATGTAAGCTTGGCCCCTTCTGTACAGTTGGTAGAAGACTACAGGAAGTAAGCGTCTTAGGTGGTCTCATTCTTCCTGTTTGGGGAACCATAGAGAAGGCCCTCTCGAAGCAGGCCCGCCTAAGCCATAGGAGGCTTCGCGTTGTACGCACAGAAACTACTACAGATAACCAACGTATAGTTGGGCTTCTTGTTCCTAATGCAGCAGTTGAAACTGTGCTTCAagATCTGGCATGGGTTCAAGAAATTGATGATTG 3755 0.445 MTQPSVPPPLAPQLPPVPGGVQVRCAGCRMILTVGPGVTEFACPTCRMPQMLPPELMSRAHQRPVHSPLPPPPQVPQHVPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCGVDLAVDVSKLNQFLPSGAPPEEVNELAVEVERDEDEGGMAGETFTDYRPPKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDNLESSKALSCLQIETLVYASQRHLHHLPNGARAGFFLGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDAGATCIEVHALNKLPYSKLDSKSVGVKEGVVFLTYSSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPESGSQPTRTGEAVLDIQARLPEARVIYCSATGASEPRNMGYMVRLGLWGDGTSFSDFREFLGALERGGVGALELVAMDMKARGMYVCRTLSYEGVEFEVVEAPLEDKMVDMYKKAAEFWAELRVELLSTSAFLNEKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKEALMEDKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLIKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSIKGRVRKVAKWQPPSDIESEEESETDSAEESTESDDELFQICEICATEEERKKLLECSCCGKLVHPACLIPPISDLVPEEWSCHLCKEKTDEYLQARHAYITELQKRYDSALERKTKILEIVRSLDLPNNPLDDIIDQLGGPEKVAEMTGRRGMLVRAANGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKSVAIISEAGSAGVSLQADRRAINQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDILPVVPPGCISDRPDTIQDFIMKAKAALISVGIVRDTTLGHGKDLGRFSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFVSILDLLIQNARIEGNLDTGIVDMKANVIELHGTPKTVHVDHMTGASTVLFTLILDRGITWELASTMLNEKQKDGLGSAYDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESLREMPLAELKSKYRKVSSLEKAQTGWEDEYEVSSKQCMHGPKCKLGPFCTVGRRLQEVSVLGGLILPVWGTIEKALSKQARLSHRRLRVVRTETTTDNQRIVGLLVPNAAVETVLQDLAWVQEIDD 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01389 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 704 IPR013083 -
Bva07g01389 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 425 IPR027417 -
Bva07g01389 1251 ProSiteProfiles Zinc finger PHD-type profile. 650 700 IPR019787 -
Bva07g01389 1251 MobiDBLite consensus disorder prediction 629 646 - -
Bva07g01389 1251 Pfam C-terminal domain on Strawberry notch homologue 741 1030 IPR026937 -
Bva07g01389 1251 MobiDBLite consensus disorder prediction 617 646 - -
Bva07g01389 1251 ProSitePatterns Zinc finger PHD-type signature. 653 697 IPR019786 -
Bva07g01389 1251 SMART PHD_3 652 698 IPR001965 -
Bva07g01389 1251 PANTHER STRAWBERRY NOTCH-RELATED 18 1251 IPR026741 GO:0006355
Bva07g01389 1251 Gene3D - 202 402 IPR027417 -
Bva07g01389 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 796 901 IPR027417 -
Bva07g01389 1251 SUPERFAMILY FYVE/PHD zinc finger 643 703 IPR011011 -
Bva07g01389 1251 PANTHER OS08G0223700 PROTEIN 18 1251 - -
Bva07g01389 1251 Pfam P-loop containing NTP hydrolase pore-1 172 472 IPR039187 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva07g01389 AAA_34 5e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01389 - - gmx:100804594 2179.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01389 07 14256601 14269104 Bva07g01389 07 14256601 14269104 ECH