Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01375 atgaaaatgatagtGTCCACCAGCAGCAGCTCATTAGTTTTCACCGAGGAGTGGTACTGCTACAGCCCTGCGTACGGTGGTGGAGCAGCATCACCGGCTTCTCCTGCTCCCACTGTCTCCACTTCTCTGTACCAGGGTACCAGGCGCTACCTTCCCTCCGATACACGCCCCACCACCGACATGTATTTACCCCCCCGTAGCGAGATTCTTCGGTATTCATCATATGCCGGTGCGGCGGACATTGACATTGGCCCGCCTGGTGTGCCTTCCAAAAGCTCCGGCACTGTTGGACCTGCCTCTTCCACCACTTCCCATTCGCTATCTATAGCTTCTTGGCCAGCAGCCGTCGCTGCTGCAAATGTTGGTTCTTCTTCGCTGGACATCATTGTTGCCGGACTAAAACGCTCTTCTGAAGCGCTCTACCATCCAACCATTTTGGGTATCCATAACACAATTGGGCAAAATGAAGCTTGGTATTCTACAAACTCATTAACCAAGTGCCCTAGATACGAGAGTGCAAGCAATTTGCCTATATATCCACAAAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTTACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCTAACTATTGTTTCAAGTGACATTCTTCCCGAGAGACCAGGAGAACCAGATTGTCCATACTTTCTAAAAACTCAGAAATGTAAGTTTGGTTCAAGGTGCAAGTTTAATCATCCAAAGCTTTCCTCTGAAAATGGAGATGCTTCTGCCTTACCTGAGAGGCCATCTGAGCCTCCGTGTGCGTTCTACATGAAAACAGGAAAATGTAAGTTTGGTTCTACCTGCAAATTCCATCATCCAAAAGACATCAAAGTTCAATTGTCTGCCCAAACAAATGGTACTGGAGAACAGACACAGTTCACTGCATTGATGGAGGGTGCTGCAGGAGATGCACAGCCAATCAATCCTCTAATTTCACATACTCCAGCACTTAAACATAATAGCAAAGGACTTCCTATAAGACCAGGTGAAGTGGATTGCCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCTACTTGCCGCTACAATCATCCTGATTGGAATGTAATTGATCCGTCCGTTGCTGCATTAGGCCATTCTATACTCTTGACACCCGCAGCAGCTAATCTTAATATTGAAGTTGTTAATCCAGCTGCATCTTTATATCAAGCTATTGACCCCAGATTGTCAAATCCAACGGTGGGAATGGGGCAAACTATCTATCCTCAACGACATGGACAAATTGAATGTGATTATTATATGAAGACGGGGAAGTGTAAATTTGGGGAAAGCTGCCATTTCCATCACCCAATGGACCGAACAGTTCCATCACTGTCACAGCAAACTGTTAAACTCACTCTGGCAGGATTACCTAGAAGAGAGGGTGCTGCCATCTGTCCGTTTTATTTGAAAACCGGGACATGCAAGTTTGGCTCAAACTGTAAATTTGATCACCCACCTCCTGGAGAAGTTATGGAGTTGGCAAAATCGCAAGAAACACCTGCATATGCAGGAGGGGAGGCCCAAGACAATTA 1622 0.4599 MKMIVSTSSSSLVFTEEWYCYSPAYGGGAASPASPAPTVSTSLYQGTRRYLPSDTRPTTDMYLPPRSEILRYSSYAGAADIDIGPPGVPSKSSGTVGPASSTTSHSLSIASWPAAVAAANVGSSSLDIIVAGLKRSSEALYHPTILGIHNTIGQNEAWYSTNSLTKCPRYESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVLTIVSSDILPERPGEPDCPYFLKTQKCKFGSRCKFNHPKLSSENGDASALPERPSEPPCAFYMKTGKCKFGSTCKFHHPKDIKVQLSAQTNGTGEQTQFTALMEGAAGDAQPINPLISHTPALKHNSKGLPIRPGEVDCPFYMKTGSCKYGATCRYNHPDWNVIDPSVAALGHSILLTPAAANLNIEVVNPAASLYQAIDPRLSNPTVGMGQTIYPQRHGQIECDYYMKTGKCKFGESCHFHHPMDRTVPSLSQQTVKLTLAGLPRREGAAICPFYLKTGTCKFGSNCKFDHPPPGEVMELAKSQETPAYAGGEAQDN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01375 540 PANTHER CCCH ZINC FINGER/TIS11-RELATED 123 528 IPR045877 GO:0003729
Bva07g01375 540 SUPERFAMILY CCCH zinc finger 439 468 IPR036855 GO:0046872
Bva07g01375 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 261 IPR000571 GO:0046872
Bva07g01375 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 445 467 IPR000571 GO:0046872
Bva07g01375 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 493 516 IPR000571 GO:0046872
Bva07g01375 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 381 IPR000571 GO:0046872
Bva07g01375 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 302 IPR000571 GO:0046872
Bva07g01375 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 208 IPR000571 GO:0046872
Bva07g01375 540 SUPERFAMILY CCCH zinc finger 183 209 IPR036855 GO:0046872
Bva07g01375 540 MobiDBLite consensus disorder prediction 27 58 - -
Bva07g01375 540 SMART c3hfinal6 182 209 IPR000571 GO:0046872
Bva07g01375 540 SMART c3hfinal6 440 467 IPR000571 GO:0046872
Bva07g01375 540 SMART c3hfinal6 489 516 IPR000571 GO:0046872
Bva07g01375 540 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Bva07g01375 540 SMART c3hfinal6 355 382 IPR000571 GO:0046872
Bva07g01375 540 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Bva07g01375 540 ProSiteProfiles Zinc finger C3H1-type profile. 355 383 IPR000571 GO:0046872
Bva07g01375 540 ProSiteProfiles Zinc finger C3H1-type profile. 489 517 IPR000571 GO:0046872
Bva07g01375 540 MobiDBLite consensus disorder prediction 34 54 - -
Bva07g01375 540 SUPERFAMILY CCCH zinc finger 239 260 IPR036855 GO:0046872
Bva07g01375 540 ProSiteProfiles Zinc finger C3H1-type profile. 182 210 IPR000571 GO:0046872
Bva07g01375 540 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Bva07g01375 540 ProSiteProfiles Zinc finger C3H1-type profile. 440 468 IPR000571 GO:0046872
Bva07g01375 540 Gene3D - 344 388 - -
Bva07g01375 540 Gene3D - 271 312 - -
Bva07g01375 540 SUPERFAMILY CCCH zinc finger 359 382 IPR036855 GO:0046872
Bva07g01375 540 Gene3D - 437 531 - -
Bva07g01375 540 Gene3D - 181 270 - -
Bva07g01375 540 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Bva07g01375 540 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 123 528 - -
Bva07g01375 540 SUPERFAMILY CCCH zinc finger 279 302 IPR036855 GO:0046872
Bva07g01375 540 SUPERFAMILY CCCH zinc finger 493 516 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01375 Bva-Chr7 14167723 14175647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01375 353 517 C2H2 Transcription Factor Family AT3G02830 37.576 6.65e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva07g01375 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01375 - - cam:101499264 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01375 07 14167723 14175647 Bva07g01375 07 14167723 14175647 ECH