Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01342 ATGGAGCTTGATTTGAATCAAGAGCCTTTGGACCAAACTCGTACTCCAGCGAGGGGATTTGATTCTGTATTGAACGAATTAGAATCAGCACATGAACATATAATAGAACGTATTAGACACCTTGAAGCTGTAACCTATAGAGCTAGGCAGCGTCAGAGGTGGCGGCAGAGTCACAATCACACTCCTGTTCAGATAATTGCTAACAACACAGAAGGATTAACAACATCTGATGTTCTAGAAGAAGACATGGTGCACCAGGGAGAGGGTGGTAACCCTGTCCAGGAAAGagcagaaagagagagagcagCCAAAAGGAGCAGTTCCTATTTAGTTGCTAGAGCATTGGAGATGGATATAGTCACAGACACCAAGAAGGCAGAAAGCAGCAATAATGGAAGCTTTTTTGATTGTAATATATGCTTGGACATGGCAAGAGATCCTATTTTGACCTGCTGTGGTCATTTGTTTTGTTGGCCATGCTTCTATTGGTTGTCTCATTCCTATTCAAATGCAAGGGAATGTCCCGTTTGTAGAGGAGAGGTCACTGAAGCGGACATAATTCCAATTTATGGCAATGCTACCATCTCTAGCAGCCATGAATTGGAACTAAAAGAAGCTGGTTTGAGAGTACCTCCAAGGCCCAATGCTCGTAGAATTGAGAGCTTCAGGCAGCAACTCATAAGCCGAGGAGCATCTTCTGCAATCCAGGAAAGGATTCAGCAGTTTAGTAATGTGATTGGTGGAATAGGAGAGCGAGTTCGGTTAGGCAGCCTTGAGCCTGCTGATGATAGAACTCACCTTTTGGCCAATCAATCTCGCACTTCCCAATCACGAGCATTATCCAGCATTGAGACAGAGAACAATCAACACCCTCGTTCCCATCAAGTCTCAAGATTGTTAATGCAAGGAGTTGCCTCCTTTTCATCCCTTTCATCAGCACTAAATTCAGCTATGGATTCTGCTGAAAGATTAGTTGAGGACCTGGAAACATATATTCACAATCACCATCTAGGAGGACGCCAACAGCTAAATCATGGTGTTGTTAGTGCAGATTCGCCTTTTAACATTGTTGCTACAACCCAAACAGCGATTAACACTCCAGATGTTGCTGCTGCAACCAACTCAGTAGCCATGGCTTCTATTTCTCCTTCAATTAGGAATAATGTTGCTACTGTTGCTATAGGCTTAGAAATCCAAACAGATAGCGCTGTAGAGATTAGTCCAATGAATCCTTCTTCCTCATCTTCCCGTGGAACTAATGTTTTAAGAGTTACTGACACTGACAATGACAACGGAATTTCAAATGAgcccagaagaagaagaaggctTAGGTG 1334 0.4175 MELDLNQEPLDQTRTPARGFDSVLNELESAHEHIIERIRHLEAVTYRARQRQRWRQSHNHTPVQIIANNTEGLTTSDVLEEDMVHQGEGGNPVQERAERERAAKRSSSYLVARALEMDIVTDTKKAESSNNGSFFDCNICLDMARDPILTCCGHLFCWPCFYWLSHSYSNARECPVCRGEVTEADIIPIYGNATISSSHELELKEAGLRVPPRPNARRIESFRQQLISRGASSAIQERIQQFSNVIGGIGERVRLGSLEPADDRTHLLANQSRTSQSRALSSIETENNQHPRSHQVSRLLMQGVASFSSLSSALNSAMDSAERLVEDLETYIHNHHLGGRQQLNHGVVSADSPFNIVATTQTAINTPDVAAATNSVAMASISPSIRNNVATVAIGLEIQTDSAVEISPMNPSSSSSRGTNVLRVTDTDNDNGISNEPRRRRRLR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01342 444 Pfam Zinc finger, C3HC4 type (RING finger) 137 183 - -
Bva07g01342 444 MobiDBLite consensus disorder prediction 405 444 - -
Bva07g01342 444 MobiDBLite consensus disorder prediction 267 293 - -
Bva07g01342 444 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 382 - -
Bva07g01342 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 382 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva07g01342 444 MobiDBLite consensus disorder prediction 405 431 - -
Bva07g01342 444 CDD RING-HC_AtRMA_like 135 179 - -
Bva07g01342 444 Coils Coil 24 44 - -
Bva07g01342 444 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Bva07g01342 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 191 IPR013083 -
Bva07g01342 444 SUPERFAMILY RING/U-box 136 184 - -
Bva07g01342 444 SMART ring_2 137 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01342 Bva-Chr7 13987344 13989758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01342 117 428 C3H Transcription Factor Family AT3G58030 33.427 1.21e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01342 K10666 - csv:101212429 352.058