Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01341 ATGGAGCTTGGTTTGAGTTTAGGAGAATCTCCAAAGCCGTTAGAGTTCATGGAAAAGCCTCGTGAGGCTTCTAACCATTTGGGATTAGGCTTCAACACCACCTTGTCGATTGGTCCAATCAgcagagaaaaagaacaaccagatgaagaaaaagtagagaagaaagaaaacaagagccATGAACATCACAGTCTCTCTCCCAAATCCGGCAATAACCCAGTCCAGCTTGATCTTCTCCCTCACACCCCTGTGGTCACAGCTCGTAACCCACTTTCCCAGCTTTCGTTCCCATGGCCCCCTCTTTCAGAAAACGGGAGTTCAGCTGAGGTTGGCTCTTCAAGGGGCTTGGAAGTGAACAGGCTGCCGTCGGCTCCGGTGCCGGAGACGGAGGAAGGGGCGGCGGTGTCTTCCTCCCCCAACAGCGCAGCGTCGTCGTTTCAGATGGATCTCTGCATATATAGCAGAGGAGGGAGTTTCAGTGGCTCAGGGAACTATAACGGCAAGAGGGATCACTCCGATGATGAGGCCTATGATCAGAGAGCTTCTTCTAGAGCAAGTGATGAAGATGACAACGGTGGTAGCACGAGGAAGAAGCTCAGGCTTTCTAAAGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAGCACAATACTCTTAACCCGCAGAAACAAAAGCTTGCTCTTGCAAAACAGCTCAATCTTCGTCCTCGCCAAGTAGAAGTTTGGTTCCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACAGAAGTAGACTGTGAATACTTGAAGAGGTGCTGTGAGACATTGACTGAAGAGAATAGGAAGCTTCACAAGGAGCTTCAAGAATTAAGAGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCGGCCACTACTTTGACCATGTGCCCATCTTGTGAGAGGGTTGCTACCAATTCCACCACTACTTCCTCTGCAACTCCTCCGACCATCTCCACCAATACAGGAGGAGCTATGACTATGGCCACCACAACCACTGCCAAAACCATTGACCCCACTTCCAAATCCATTGGATTGCCCTTTCGCAAGCCCAGGTTTTATCCATTTGCTCACACCCAACCCCATCTTCACCCCTCCACAGCATCTTG 1130 0.4708 MELGLSLGESPKPLEFMEKPREASNHLGLGFNTTLSIGPISREKEQPDEEKVEKKENKSHEHHSLSPKSGNNPVQLDLLPHTPVVTARNPLSQLSFPWPPLSENGSSAEVGSSRGLEVNRLPSAPVPETEEGAAVSSSPNSAASSFQMDLCIYSRGGSFSGSGNYNGKRDHSDDEAYDQRASSRASDEDDNGGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTTTSSATPPTISTNTGGAMTMATTTTAKTIDPTSKSIGLPFRKPRFYPFAHTQPHLHPSTAS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01341 375 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981|GO:0006355
Bva07g01341 375 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677
Bva07g01341 375 SMART halz 252 295 IPR003106 GO:0006355|GO:0043565
Bva07g01341 375 MobiDBLite consensus disorder prediction 161 200 - -
Bva07g01341 375 MobiDBLite consensus disorder prediction 86 113 - -
Bva07g01341 375 MobiDBLite consensus disorder prediction 167 200 - -
Bva07g01341 375 MobiDBLite consensus disorder prediction 42 65 - -
Bva07g01341 375 PANTHER PROTEIN, PUTATIVE-RELATED 58 369 - -
Bva07g01341 375 Pfam Homeodomain 196 250 IPR001356 GO:0003677
Bva07g01341 375 MobiDBLite consensus disorder prediction 1 141 - -
Bva07g01341 375 Coils Coil 265 288 - -
Bva07g01341 375 CDD homeodomain 196 253 IPR001356 GO:0003677
Bva07g01341 375 Gene3D - 200 250 - -
Bva07g01341 375 MobiDBLite consensus disorder prediction 312 331 - -
Bva07g01341 375 SMART HOX_1 194 256 IPR001356 GO:0003677
Bva07g01341 375 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355|GO:0043565
Bva07g01341 375 SUPERFAMILY Homeodomain-like 184 253 IPR009057 -
Bva07g01341 375 PANTHER - 58 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01341 Bva-Chr7 13976151 13977828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01341 64 310 Homeobox Transcription Factor Family AT5G47370 55.600 1.46e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva07g01341 Homeodomain 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01341 K09338 - gmx:100778742 431.409