Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01294 ATGTATAAGAAGGGTAATTGTAAGTTCTTTGTCCGTGGATCGTGTTGGAAAGGGGAGCAATGTGAATATTCTCATGCCAGAAAAGATCCCGCAGTTGATGTTTGCACGTTTTATCAGAAAGGACTCTGTGCTTATGGTAGTCGATGCAGATATAAACACATCAAAGCTTCTCAAGCAGAGTCTTCAGCATCATCCTCAGCAAACAAATCTCTGGCTTCAAATTATGTTGTGGCCCTTGCTACAAGAGGGACATCAAGTTGGGCTCGAAAGACTACAAAAGCTTTGCCCTCTGACAAACCTGCAAGAAGTTTAGAACAGAGTCACCAGAATTCTCCAGTGAATGTTGGTGTTGGGAAATTCAGTACTGCTATACCGTCTGAGTATTTGTTTTGCACATTTCCTGCTGCGAACTGCCCCTTGGAAGATAAGTGCAATCGTATCCATGGAGACCAGTGCCTGTACTGTAAAAAGTACTGCTTGCATCCTACCGAACATaatgagagagaaaagcaTTTGCAGACTTGtgagaaaaagggaaaataccTTCAGGCTTTGAAAGACAGTCAAGAAATAGAATGCAATGTTTGCCTGGAGTCTGTTCTCTCAAAGCCTAAAGCAGCTGAACGAAAATTTGGGCTCTTTCCTGAATGTGACCATGCTTTCTGTATATCTTGCATCAGGAATTGGCGCAGTAGTGCAACAAACGCCCCAGCTCCTGGAACGGATCTCCCTCGTACAGTGAGGGCATGCCCAGTGTGCCGCAAGCAGTCATATTTTGTCATTCCAAGTCCTATCTGGTATTctacaaaggaagaaaaggaggAAATTATTGAGAATTACAAGGCAAAGTGCAAGCTGATTGATTGCAAGCATTTTGATTCTGGAAATGGGAACTGTCCTTTCGGGACTAGTTGTTTCTACAAGCATACTGTGAAGCCTGGTTCGTACACATGGAAACATCATAGGCCACCTCCACGCAGAAAAAACAGGTTTATTAAGTATGACATGTTGGATATGCTCGGTGAATTTGATTTGGAAAGTGGAGAATATTATTCCATCATGCGGGATTCAGAAGTTTTCGGTAACATGGATCCATTTGAGCCGATGGCTTGGTCGGAGATGCTGGGTTCTGGTTCAGGGCCAGTGCCTTTTGGAcctgatgatgaagatgaagactCTGATTATGAAAACAGTTTTCGGATTAATGGTTTATCAGAAGCATTGGTGGGTTCTGGTAGTGATGAGGAGGATCCCCTGGAAGCAGCAATAATGTCAATGATGCTGTCTAATTTTGTAGAAGAAATGCGTGAGTGGGAGGGCATATA 1325 0.4091 MYKKGNCKFFVRGSCWKGEQCEYSHARKDPAVDVCTFYQKGLCAYGSRCRYKHIKASQAESSASSSANKSLASNYVVALATRGTSSWARKTTKALPSDKPARSLEQSHQNSPVNVGVGKFSTAIPSEYLFCTFPAANCPLEDKCNRIHGDQCLYCKKYCLHPTEHNEREKHLQTCEKKGKYLQALKDSQEIECNVCLESVLSKPKAAERKFGLFPECDHAFCISCIRNWRSSATNAPAPGTDLPRTVRACPVCRKQSYFVIPSPIWYSTKEEKEEIIENYKAKCKLIDCKHFDSGNGNCPFGTSCFYKHTVKPGSYTWKHHRPPPRRKNRFIKYDMLDMLGEFDLESGEYYSIMRDSEVFGNMDPFEPMAWSEMLGSGSGPVPFGPDDEDEDSDYENSFRINGLSEALVGSGSDEEDPLEAAIMSMMLSNFVEEMREWEGI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01294 441 Pfam RNA-binding, Nab2-type zinc finger 288 309 - -
Bva07g01294 441 Pfam RNA-binding, Nab2-type zinc finger 7 26 - -
Bva07g01294 441 Pfam Zinc finger, C3HC4 type (RING finger) 193 253 IPR018957 GO:0046872
Bva07g01294 441 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Bva07g01294 441 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Bva07g01294 441 ProSiteProfiles Zinc finger RING-type profile. 193 254 IPR001841 -
Bva07g01294 441 ProSiteProfiles Zinc finger C3H1-type profile. 283 312 IPR000571 GO:0046872
Bva07g01294 441 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Bva07g01294 441 Gene3D - 1 70 - -
Bva07g01294 441 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Bva07g01294 441 PANTHER MAKORIN-RELATED 6 434 IPR045072 -
Bva07g01294 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 285 IPR013083 -
Bva07g01294 441 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Bva07g01294 441 SMART c3hfinal6 283 311 IPR000571 GO:0046872
Bva07g01294 441 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Bva07g01294 441 SMART c3hfinal6 127 150 IPR000571 GO:0046872
Bva07g01294 441 MobiDBLite consensus disorder prediction 90 111 - -
Bva07g01294 441 CDD RING-HC_MKRN 193 254 - -
Bva07g01294 441 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Bva07g01294 441 SUPERFAMILY RING/U-box 183 260 - -
Bva07g01294 441 SMART ring_2 193 253 IPR001841 -
Bva07g01294 441 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 6 434 - -
Bva07g01294 441 SUPERFAMILY CCCH zinc finger 31 53 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01294 Bva-Chr7 13647726 13651933 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva07g01294 zf-C3HC4 5.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01294 K15687 - gmx:100819577 519.235