Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01291 ATGACAGACCCTGCTCAGTCCAATTTATTCACAGGATGGTTCAACTTCATGCCCCTCCACCACCCTCAGTACTATTCTAATTCTTTCTCTTCACAACCCAAGTTTTCCTCCTCTTTCCCTCTTGATTATCCAAACACTAGATACTCCCTTCAATTCCCACCATCCAATTCCTCTGCAGCTCCTCCTTCTCTTCCTCCCAGAGAAGCTCTTCCTCTTATAAACAACTTAACCCTCAATACAAACCTGCAGCAACACATAAACGAGCCCTCAAACAGTTTGGTGGAAGAGGAATCAGAGGACAATATCAGGAATATGAACAAGAAGGAtattgaagatgatgatgatgatgaaactGTCACAGTAGCTTTGTCCATAGGGCTTCCCAGCAAGAATTCTGATCTGGGTTCAAGGCAGATCTCGTCATCAACTTCTGCAGAGACGgctgagaaagaagaaacgaCCGTCGTTTCTGGACACCCTTCGGAGAGACTGAACAAGGGTCAATATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCATGCCCTGTGTGCTCTAAAACTTTCAACAGATATAATAATCTTcagATGCATATGTGGGGACATGGATCTCAATATAGAAAAGGGCCTGATTCTTTAAGGGGAACTCAACCAACAGCCATGCTAAGGCTTCCATGCTTTTGTTGTGCTCCAGGTTGCAAGCACAATATTGACCACCCAAGAGCAAGGCCTTTGAAAGATTTCAGAACTCTACAAACACATTACAAGAGAAAGCATGGGATTAAACCCTATATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAGGGAGACTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTCTTTGTGGCTCTGATTTCAAACACAAAAGGTCCTTAAAAGACCACATTAAGGCCTTTGGCCGCGGCCATGGAGCTTTTGGCATCGATTGCTTGCAAGAAGATGACGATGCAGAAGCTGAAGGAGAAGCAGCCTCCGAGATAGAACATGATAGGGAGAACtcaatatg 1055 0.4218 MTDPAQSNLFTGWFNFMPLHHPQYYSNSFSSQPKFSSSFPLDYPNTRYSLQFPPSNSSAAPPSLPPREALPLINNLTLNTNLQQHINEPSNSLVEEESEDNIRNMNKKDIEDDDDDETVTVALSIGLPSKNSDLGSRQISSSTSAETAEKEETTVVSGHPSERLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGRGHGAFGIDCLQEDDDAEAEGEAASEIEHDRENSI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01291 351 Gene3D Classic Zinc Finger 183 206 - -
Bva07g01291 351 SMART c2h2final6 268 288 IPR013087 -
Bva07g01291 351 SMART c2h2final6 184 206 IPR013087 -
Bva07g01291 351 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 340 - -
Bva07g01291 351 MobiDBLite consensus disorder prediction 130 160 - -
Bva07g01291 351 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Bva07g01291 351 Gene3D Classic Zinc Finger 246 319 - -
Bva07g01291 351 SUPERFAMILY beta-beta-alpha zinc fingers 253 288 IPR036236 -
Bva07g01291 351 PANTHER ZINC FINGER PROTEIN WIP2 1 340 IPR043584 GO:0003700|GO:0010468
Bva07g01291 351 MobiDBLite consensus disorder prediction 332 351 - -
Bva07g01291 351 MobiDBLite consensus disorder prediction 130 151 - -
Bva07g01291 351 Pfam Zinc finger, C2H2 type 184 203 IPR013087 -
Bva07g01291 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 288 IPR013087 -
Bva07g01291 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Bva07g01291 351 SUPERFAMILY beta-beta-alpha zinc fingers 177 206 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01291 Bva-Chr7 13640103 13642438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01291 1 349 C2H2 Transcription Factor Family AT3G57670 53.181 1.40e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva07g01291 zf-C2H2_6 9.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01291 - - gmx:100794446 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01291 07 13640103 13642438 Bva09g01277 09 6902949 6905127 ECH
Bva07g01291 07 13640103 13642438 Bva07g01291 07 13640103 13642438 ECH