Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01276 ATGGAATGTCAAAGAATGAAAGAGGGATACGTGTTGAGGGGACAGAGCCTGTTGGTGGAGAAATCTGACATTGTTGTAGTAACTTCACTGTGTGTTGATTATGAGCCATGGGCATGGAACTCGGCCTTCATTTTAGACCCATTAAATCtgggagaagaaaaaacatcGGTTGCAGGTTTTGCTGGATTGAGAGAAGGGGCAAGTTTTAGGGCATGTGATGTCACAAATGGACAATCTACCGCATCAACTAGTAGGTTGAATGGTCACATGAACTTCTCTTCTTGCTCGGGGAGAATGCCTCAGATTgctgaaaatggaaatgaaagcATGGAATCAAGTTGTGTTGACAGTAGAAACCTGGGAAATGATAATGGCAGCAGCAAATGTTTTATGCCTAGTTTCACCAGTGACTTCTGGAAAAGTTCTGCATTCAATGGCCAAAAAACAGCTAGTGACAATGATGAAATCATGTTCTCTACTTCAGGTGCTTTGGAAACTCAGGATTCAGATTTTGGATTCCAAAACCGTGTAAGAAGAACACGAATCAGTGAAAGAATACAGAAACTGCATGATTTTTTCCCCAAATCAGATAAgCAAACAAGCACAGCAGATATGCTGGATTTGGCAGTTGACTATATCAAAGAACTGCAGAATCAAGTTAAGATGCTGACAGAGACCAAGGCAAAGTGCCCGTGTTCAaGTTTAAAGTCTCGTTTGTG 719 0.3922 MECQRMKEGYVLRGQSLLVEKSDIVVVTSLCVDYEPWAWNSAFILDPLNLGEEKTSVAGFAGLREGASFRACDVTNGQSTASTSRLNGHMNFSSCSGRMPQIAENGNESMESSCVDSRNLGNDNGSSKCFMPSFTSDFWKSSAFNGQKTASDNDEIMFSTSGALETQDSDFGFQNRVRRTRISERIQKLHDFFPKSDKQTSTADMLDLAVDYIKELQNQVKMLTETKAKCPCSSLKSRL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01276 239 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 176 236 - -
Bva07g01276 239 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 55 171 - -
Bva07g01276 239 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 176 236 - -
Bva07g01276 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Bva07g01276 239 SMART finulus 176 222 IPR011598 GO:0046983
Bva07g01276 239 CDD bHLH_AtbHLH_like 176 223 IPR045239 -
Bva07g01276 239 Pfam Helix-loop-helix DNA-binding domain 176 217 IPR011598 GO:0046983
Bva07g01276 239 Gene3D - 174 235 IPR036638 GO:0046983
Bva07g01276 239 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 171 - -
Bva07g01276 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01276 Bva-Chr7 13538857 13540988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01276 176 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 67.797 1.59e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva07g01276 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01276 - - gmx:100795896 220.32