Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01172 ATGTATTTTGCTGGTAAGGTGGCAAATTATGTGAAAGTGCTTGAACCAAAGTTGTCTTCACTCTTCAGTCTACCTAAGCCTTCTGTGCTGGTGGTTGCATGTATTAGCATGGCATCGAATAATACATTCTTTGATGACATACGAAGCACATCTGATGTTGATCCTCCTCAAAATGAAGAGTTGCTTGATGTCGGTGAACTTGTGGATGATCCTTCACAAAGGTCCCTAAAACCCAATGTAACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTGTGCTTGAACGCCATGTATCCTCCAATCCATCAGTGTTCAAATGGTCATACTTTATGCTCAGGTTGCAAACCGAGGGTGCACAATCGGTGTCCTACTTGTAGGCATGAGCTAGGCAATATCAGATGTCTGGCACTGGAGAAGGTTGCTGCATCGTTGGAACTTCCCtgtaaatatcaaaattatggGTGCATCGGCATATATCCATATTACAGTAAGCTAAAACATGAATCTCAATGTGCATACAGACCTTATAACTGTCCATATGCTGGATCAGAGTGCACTGTCCTCGGTGATATACCTTATCTGGTGTCCCATCTGAAAGATGATCACAAAGTGGACATGCACAATGGGAGCACCTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTTTTCAGTTGCTTTGGCCAGTATTTTTGTCTGCATTTTGAAGCTTTTCAGCTTGGAATGGCTCCTGTCTACATAGCATTTTTGCGGTTTATGGGTGATGATAATGATGCTAAGAATTACAGTTATAGTCTGGAGGTGGGTGGTAATGGTAGGAAAATGATCTGGCAGGGAGTGCCTAGAAGCATTAGGGACAGCCACAGGAAGGTTCGTGACAGTTTTGACGGCCTCATCATTCAACGCAACAtggctttatttttctctggaGGCGACCGAAAGGAATTGAAGCTAAGGGTTACAGGGAGGATTTGGAAAGAACAATG 1022 0.4188 MYFAGKVANYVKVLEPKLSSLFSLPKPSVLVVACISMASNNTFFDDIRSTSDVDPPQNEELLDVGELVDDPSQRSLKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQNYGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECTVLGDIPYLVSHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01172 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 144 IPR013083 -
Bva07g01172 340 SUPERFAMILY TRAF domain-like 145 337 - -
Bva07g01172 340 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 201 333 IPR008974 GO:0005515
Bva07g01172 340 CDD RING-HC_SIAHs 90 128 - -
Bva07g01172 340 Pfam Seven in absentia protein family 134 333 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bva07g01172 340 CDD Sina 206 334 - -
Bva07g01172 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 200 IPR013083 -
Bva07g01172 340 ProSiteProfiles Zinc finger RING-type profile. 92 128 IPR001841 -
Bva07g01172 340 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 340 - -
Bva07g01172 340 ProSiteProfiles Zinc finger SIAH-type profile. 145 205 IPR013010 GO:0008270
Bva07g01172 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 42 340 - -
Bva07g01172 340 SUPERFAMILY RING/U-box 84 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01172 Bva-Chr7 12859384 12861815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01172 83 340 C3H Transcription Factor Family AT2G41980 79.457 1.34e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01172 K04506 - gmx:100793457 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01399 09 7778731 7782407 Bva07g01172 07 12859384 12861815 BWGD