Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01164 ATGACCAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACACTGCAAGAAAAGCAACAtacaagaagaggaagaagggTCTGATGAAGAAGGTGAGTGAGCTGagcaccctttgtgggattgACGCATGTGCCATAATGTTCAGTCCCTATGAGGCTCAGCCAGAGATTTGGCCATCTCCACCTGGGGTCCTGGATGTGATTTCCAAGTTCAGGGAAATGCCTGAATTGGAGCAGAGCAAGAAGATGATGAACCAAGAGGGGTTCCTGAAGCAAAGGGTCTCCAAGACCCAAGAACAGATCCAGAAAGCCTGCGAGGAAAATAACAGAAAGGAGGTGACTCAACTCATGTTTCAGTATCTTGCTGCAGAGAAGGATCTGCAGAATGTGAGGAACATGGTGCTTTTGAGGCAGCTGACGTCAGTTCTTGACAATAATCTGAGGGAGATCACTATGAGGATGGAGGCACTGAAGATGGAGTCTCAAGGCCAGAGCCATGGCCAAGCGAGCAACATGGTGCCGCAGCCGGAGAATGTTGCAGTGAAGGCAAAGGTGGAGCAAGATGAGGAGCTGAATGTGAATGCTGGGAACACCATGCAGAGACAACAGTGGCAGATGAACATGATGGATCGGAATGGTGGTGGGAATGGGATGGTGATGCCTATGCcagttcaaaatttcaatcacCAAAAGGCTGCGTTCTATAACAATCCCTTCTTCAAGGGAAATGGTATGTG 737 0.4491 MTRKKVKLAFIANDTARKATYKKRKKGLMKKVSELSTLCGIDACAIMFSPYEAQPEIWPSPPGVLDVISKFREMPELEQSKKMMNQEGFLKQRVSKTQEQIQKACEENNRKEVTQLMFQYLAAEKDLQNVRNMVLLRQLTSVLDNNLREITMRMEALKMESQGQSHGQASNMVPQPENVAVKAKVEQDEELNVNAGNTMQRQQWQMNMMDRNGGGNGMVMPMPVQNFNHQKAAFYNNPFFKGNGM 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01164 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva07g01164 245 Gene3D - 13 140 IPR036879 GO:0003677|GO:0046983
Bva07g01164 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bva07g01164 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva07g01164 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva07g01164 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva07g01164 245 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Bva07g01164 245 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva07g01164 245 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bva07g01164 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 218 - -
Bva07g01164 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01164 Bva-Chr7 12828346 12829227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01164 1 183 Type I MADS-box Gene Family AT5G48670 47.644 1.07e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva07g01164 SRF-TF 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01164 - - gmx:100813231 226.483