Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01160 ATGATGCAGAATAGTGTTCTTCCTGATGTATTTACCCACAATCATCTCATAAATGGTCTGTGCAGAATTGGTCTTACAGAGAAGGCAGATTGGCTTATTAGAGAGATGATAGAACTGGGCCCCTCTCCCAATCGTGTCACTTACAACACTCTCATTAAGGGTTATTGCCGTATTAATAACATAGATAAAGCTCTTTATCTCTTCTCCACCATGGAGAATGTTGGCATTCAGCCAAACAGGGTTACTTGCAATACACTTGTACATGCACTGTGTAATAAAGGTCTTCTGAAGGAAGCTAATAAGCTGCTTGAGGAAATAttaaatgatgatgatgacgaTGAGAACTTACCAGATTTAGTTACCTCCACTATATTAATGGATGGTTATTTTAAGAATGGATCTATAAGTCAGGGTCTTAGTCTCTGGGATGAGATGCTTCAAAAGGGAACAAAAGTAGATGTGGTTGCTTATAATGTTCTTATTTATGGATTTTGTATGAGTCAGGAAATAAATCTTGCATATGGATGTGCTTGTGAAATGCTTAGAAAGCTTGTAATTTA 560 0.3589 MMQNSVLPDVFTHNHLINGLCRIGLTEKADWLIREMIELGPSPNRVTYNTLIKGYCRINNIDKALYLFSTMENVGIQPNRVTCNTLVHALCNKGLLKEANKLLEEILNDDDDDENLPDLVTSTILMDGYFKNGSISQGLSLWDEMLQKGTKVDVVAYNVLIYGFCMSQEINLAYGCACEMLRKLVI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01160 186 Pfam PPR repeat 6 36 IPR002885 -
Bva07g01160 186 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Bva07g01160 186 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 183 - -
Bva07g01160 186 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 183 - -
Bva07g01160 186 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Bva07g01160 186 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Bva07g01160 186 SUPERFAMILY HCP-like 23 159 - -
Bva07g01160 186 Gene3D Tetratricopeptide repeat domain 114 185 IPR011990 GO:0005515
Bva07g01160 186 Pfam PPR repeat family 43 92 IPR002885 -
Bva07g01160 186 Pfam PPR repeat family 117 165 IPR002885 -
Bva07g01160 186 Gene3D Tetratricopeptide repeat domain 1 113 IPR011990 GO:0005515
Bva07g01160 186 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Bva07g01160 186 TIGRFAM PPR: pentatricopeptide repeat domain 81 108 IPR002885 -
Bva07g01160 186 TIGRFAM PPR: pentatricopeptide repeat domain 123 154 IPR002885 -
Bva07g01160 186 TIGRFAM PPR: pentatricopeptide repeat domain 46 79 IPR002885 -
Bva07g01160 186 TIGRFAM PPR: pentatricopeptide repeat domain 11 44 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01160 Bva-Chr7 12803264 12807682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01160 64 186 Glycosyltransferase AT1G05670 25.203 1.37e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01160 - - qlo:115970077 254.603