Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01051 atgcCGAAGAAGAACAATAGTGACAGTGATGAAGAAGACATCTTCTACTACCGATATTCGTCTTCTTCAGCAGCTGCAGCGTCAAATCCCACAAAAGCCCACAAAAAATCCGGCGGTTCTGGTGGATTAGCACCGTCAAAATCCACCATTTACGTCTCCAACATCGACTACTCCCTCACCAACTCCGACCTCCATACCCTCTTCTCCACCTTCGGAAAAATAGCCCGAGTCACCGTTCTCAAGGATCGAGTTACCCGCCAAAGCCGCGGCGTCGCTTTCATACAATTCGTTTCCCGCGACGATGCCCAGAAAGCCGCCCACGAGATGAACCGAAAAATCCTCAACGGCAGGACCCTGACGGCTTCAATAGCCTCCGACAACGGCCGCGCGGCTGAgtttataaagaaaaggatttaCAGGGATAAGAGTCGGTGTTATGAATGTGGGGAATCTGGGCATTTGTCTTATGAGTGTCCCAAGAATCAATTGGGTCCCAGAGAGCGTCCGGCGCCAAAGCGAGGGAGAAGGGGTGGCGGCAGCGGCGGTTTCCATCGGACGGAGGATGACGACGATGACGGATCCGATGGTGAGCATCGATTTGAGGATGATAATTGGGCTTCGGTTGTGGATGATCGAGCGGATGAGAGGCTGTTGAGAGGGAACGAAAAGGttcaagagaagaagaaggctAAGAAGGTTAGCTACTTCAGCGATGAGAGCGATGCAGAAGATGATTG 737 0.4966 MPKKNNSDSDEEDIFYYRYSSSSAAAASNPTKAHKKSGGSGGLAPSKSTIYVSNIDYSLTNSDLHTLFSTFGKIARVTVLKDRVTRQSRGVAFIQFVSRDDAQKAAHEMNRKILNGRTLTASIASDNGRAAEFIKKRIYRDKSRCYECGESGHLSYECPKNQLGPRERPAPKRGRRGGGSGGFHRTEDDDDDGSDGEHRFEDDNWASVVDDRADERLLRGNEKVQEKKKAKKVSYFSDESDAEDD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01051 245 SUPERFAMILY RNA-binding domain, RBD 45 130 IPR035979 GO:0003676
Bva07g01051 245 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Bva07g01051 245 MobiDBLite consensus disorder prediction 23 43 - -
Bva07g01051 245 SMART rrm2_1 49 122 IPR003954 GO:0003676
Bva07g01051 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Bva07g01051 245 SUPERFAMILY Retrovirus zinc finger-like domains 135 161 IPR036875 GO:0003676|GO:0008270
Bva07g01051 245 MobiDBLite consensus disorder prediction 166 238 - -
Bva07g01051 245 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 244 IPR044598 GO:0000398|GO:0005689
Bva07g01051 245 SMART rrm1_1 49 122 IPR000504 GO:0003723
Bva07g01051 245 Gene3D - 2 132 IPR012677 -
Bva07g01051 245 Gene3D - 135 176 - -
Bva07g01051 245 ProSiteProfiles Zinc finger CCHC-type profile. 144 160 IPR001878 GO:0003676|GO:0008270
Bva07g01051 245 MobiDBLite consensus disorder prediction 156 245 - -
Bva07g01051 245 CDD RRM_ZCRB1 47 124 IPR034219 -
Bva07g01051 245 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 244 - -
Bva07g01051 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Bva07g01051 245 Pfam Zinc knuckle 144 160 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01051 Bva-Chr7 12121702 12126191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01051 48 124 Eukaryotic Initiation Factors Gene Family AT4G34110 29.870 3.41e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01051 K13154 - twl:120005174 298.516