Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00978 ATGGCCACTCTGAGGTTATCGTCTTTTCCAAAATTGCATAGTTATCTTCTTGTCTTGCTTTTCTACTTGGAGATGTGTCTTGGGTTCAGCCCCAAACAGCAAAACATGTCTCTGGTGGCAACCCATTGGTCCTCCGCCGGAGCCACCTGGTACGGCAGCCCTCACGGTGCGGGAAGCGACGGAGGATCTTGTGGTTATGGGAATACAGTGTCGCTGCCACCATTCTCCTCCATGGTTACAGGAATAGGCCCTTCTCTCTACCAATCAGGCAAAGAATGTGGAGCCTGCTATCagGTGAAATGCACAAATCATCCATCATGTTCTGGCAAACCAGTGAGCGTGGTAATAACAGATTTTTGCCCCGGATGTCCATCTTCGTACGGATCTGCACATTTTGATCTAAGTGGAACAGCGTTTGGTGCCATGGCAAAACCTGGCCAAGCAGATAAACTTCGCGATGCAGGTGTTCTGCAAATTCGCTATGCCCCTGTTGGATGTGATTACTCCGGAAAGACTATGATATTTCGCGTTGATCTGGGTTCAAACCCTAGCTACATCGCGGTGCTGGTGGAGTATGAAGAGGGAGATGGTGATCTAGCAGGTGTTTCGCTAATGGAGGCCACAAAGGAGAGGCAAGGGTGGCGTGCTATGCAACAGTCATGGGGTGCAGTTTGGAAGCTTGATGCAGGCTCAATACTAAAAGCTCCAATCACTATGAAGATAACCTCTCGGTATTCTGGAAAAACCCTAGTTGCAAAGAATGTGATTCCAAAGGGATGGAAACCTGGTGCAATCTATAGATCCTTGGTTAACTACCTTTG 821 0.4823 MATLRLSSFPKLHSYLLVLLFYLEMCLGFSPKQQNMSLVATHWSSAGATWYGSPHGAGSDGGSCGYGNTVSLPPFSSMVTGIGPSLYQSGKECGACYQVKCTNHPSCSGKPVSVVITDFCPGCPSSYGSAHFDLSGTAFGAMAKPGQADKLRDAGVLQIRYAPVGCDYSGKTMIFRVDLGSNPSYIAVLVEYEEGDGDLAGVSLMEATKERQGWRAMQQSWGAVWKLDAGSILKAPITMKITSRYSGKTLVAKNVIPKGWKPGAIYRSLVNYL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00978 273 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Bva07g00978 273 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Bva07g00978 273 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Bva07g00978 273 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Bva07g00978 273 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Bva07g00978 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Bva07g00978 273 PANTHER EXPANSIN-B15-LIKE 11 272 - -
Bva07g00978 273 SUPERFAMILY Barwin-like endoglucanases 37 170 IPR036908 -
Bva07g00978 273 Gene3D - 28 167 IPR036908 -
Bva07g00978 273 Gene3D - 168 272 IPR036749 -
Bva07g00978 273 Pfam Lytic transglycolase 84 161 IPR009009 -
Bva07g00978 273 SMART dpbb_1 79 161 IPR007112 -
Bva07g00978 273 PANTHER EXPANSIN-B3 11 272 - -
Bva07g00978 273 SUPERFAMILY PHL pollen allergen 172 268 IPR036749 -
Bva07g00978 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Bva07g00978 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 268 IPR007117 -
Bva07g00978 273 Pfam Expansin C-terminal domain 175 257 IPR007117 -
Bva07g00978 273 PRINTS Major pollen allergen Lol pI signature 101 111 IPR005795 GO:0005576|GO:0019953
Bva07g00978 273 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Bva07g00978 273 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Bva07g00978 273 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00978 Bva-Chr7 11599364 11601832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00978 29 272 Expansin Gene Family AT1G65680 59.109 1.43e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00978 - - tcc:18605317 392.504