Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00937 ATGGCTTTGACAGTGGTAGCTATATCGGCAGTTTCTACAGTGTTAAGCATTGTAGGCCTTCAATTTTGGACCGAGTTGTCATTAGGTAAACTTAAATTGGATGGACTGATCAGCAagaatttgattgatttggaCAATGCCAATCCTGCTATTGAATTGCTTTCGGGATCTTATGCCACCTTATGGTTGCTggcaaattttataatcaatgtATTTATTCTACTCAATCTTTGTCTCAAGgctattttcttttctgagtTATATCCTTCTGAAACTCGGAAGCTGGTCGAGCGTCTGATTAACTATGTCATTTACAagGGAACATTTCTACCTCTAATTGTGCcaccaaatatatatcttgCTGGACTGTGGTCTACCTGGCTGATTTTGCTATGTTCATTAAAGATGTTTCAATCTTTGTCTAGAGATCGATTGGAGCGGCTGAATGCGTCTCCATCTGTTAGACCTTGGACATATCTTCGTGTATATTCGGCATtgctatttgtttttttggttgatgtTTTCTGGATAAGGCTATGTCTGGTGATATATAAAACACTTGGTACTTCTATGTTATTGTTGCTGTTCTTTGAGCCTTTGAGTATTGCTTTTGAGACCCTACAGGCCATATTGGTGCATGGATTCCAGTTACTTGACATATGGCTCCATCATTCAGCATACACCAGCGCTTCTTGCCAAAGGTCCAAATTTTTTGACACATTAGCAGCAGGATCATTATTGGAATGGAAGGGGGTTCTTGTCCGGAACTTTGGATTTTTCCTAGACCTGGCAACTTTCTTAATGGCACTTGGCCATTACTTGTATATTTGGTGGCTTCATGGCATGGCATTCCACCTTGTAGATGCAGTGCTATTTCTAAACACACGTGCATTGCTCAGTGCAATGATAAAGCGTGTAAAAGGCTTTATCAGGTTAAGAATAGCTCTAGGTGCACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTACGAGCATATGATGATGAATGTGCTATCTGTAGGGAACCCATGGCTAAGGCTAAAAGGCTAAACTGCAATCATCTTTTCCACCTTGCATGTTTGAGATCTTGGTTGGACCAAGGCCTGACTGAAATTTATACTTGTCCAACATGTCGAAAGCCACTTTTTGTTGTTCGGCCTGAAAATGAAGCAAACTCTAATACAAGGGAAATATCAAGTGATGAGCAGCTTGCCCGTCAAATAAGTGCAGGACTTGATCGGTCAAACTCTGCTAGACATACCATGCCTGCGGGATTATTTCCCAATCAGACACCAAACTCTGTGGAAGGAATTCCTTGGAGGGGTGCAGGAGTGGACTCGGGTTGGTTgcattcttggccaaatcaaGGTGTTGATGGGGCTGGTCCGTCTACTGCTATGAGGTCTGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTGGGAGAAACCTATGCTCAGACTGCTCTTGAAGATACTGCTTGGAGCCTTTGGCCTGTTAATCCCTCTCAGGCTTCTGCAAGTGGCTCAGCCATTCCCCCTCCTGGTGGAAGATTCCCTGCACGCTCTGGTAATTTACAACTTAGGACTCCTTCACAGTCCACAAATGATGATTTGGCAAATTTACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTTCCTCATATACCAGATGAGTTAATTTTCCAGGACTTGCAGCGGACAAATTCGGCTACAGTTACTGTGAATAATCTTCTCCAGATGTG 1760 0.4062 MALTVVAISAVSTVLSIVGLQFWTELSLGKLKLDGLISKNLIDLDNANPAIELLSGSYATLWLLANFIINVFILLNLCLKAIFFSELYPSETRKLVERLINYVIYKGTFLPLIVPPNIYLAGLWSTWLILLCSLKMFQSLSRDRLERLNASPSVRPWTYLRVYSALLFVFLVDVFWIRLCLVIYKTLGTSMLLLLFFEPLSIAFETLQAILVHGFQLLDIWLHHSAYTSASCQRSKFFDTLAAGSLLEWKGVLVRNFGFFLDLATFLMALGHYLYIWWLHGMAFHLVDAVLFLNTRALLSAMIKRVKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTEIYTCPTCRKPLFVVRPENEANSNTREISSDEQLARQISAGLDRSNSARHTMPAGLFPNQTPNSVEGIPWRGAGVDSGWLHSWPNQGVDGAGPSTAMRSVGLGRVQMMMRHLASVGETYAQTALEDTAWSLWPVNPSQASASGSAIPPPGGRFPARSGNLQLRTPSQSTNDDLANLLAMAETVREVLPHIPDELIFQDLQRTNSATVTVNNLLQM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00937 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Bva07g00937 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Bva07g00937 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Bva07g00937 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 388 IPR013083 -
Bva07g00937 586 Gene3D - 545 585 - -
Bva07g00937 586 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 586 - -
Bva07g00937 586 Pfam Ring finger domain 336 380 IPR001841 -
Bva07g00937 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Bva07g00937 586 MobiDBLite consensus disorder prediction 511 539 - -
Bva07g00937 586 CDD RING-H2_synoviolin 335 380 - -
Bva07g00937 586 SUPERFAMILY RING/U-box 325 388 - -
Bva07g00937 586 SMART ring_2 338 379 IPR001841 -
Bva07g00937 586 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00937 Bva-Chr7 11429601 11437226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00937 49 421 C3H Transcription Factor Family AT3G16090 28.960 1.65e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00937 K10636 - gmx:100819656 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00937 07 11429601 11437226 Bva07g00937 07 11429601 11437226 ECH