Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva07g00932 | ATGAGAACTCCGAAATGCACGAGGCAGCATGTTCTGACTTTGATGGATCAGTATCAGGAAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAATCACGCTCTTCAATATGAGAGGCTATTTGTGTGTATGCTTGGTGATTGTCATGCAAGTTATAGAAGAAAGGACCACTTGACTCGTCATCTTCTGCAGCATAAGGGGAAAACTTTCAAATGTCCAATTGAGAATTGCAACCGTGATTTTGCTTTCCAGGGGAACATGACAAGACATGTCAAGGAATTTCACGATGAGAATTCTGCCTCCGCTAATTTTGGAAGTGAGAAGCTGTACGTTTGCCCAGAAATTGGTTGTGAGAAGGTTTTCAAATTTGCGTCAAGGCTGAAAAAGCATGAAAATTCTCAtgTTAAGCTGGAGACAGTGGAGGCACTCTGCCTAGAACCTGGTTGTATGAAACATTTCACTAATGTGGAGTGCCTTAAAGCTCATATCAAATCCTGCCATCAATATGTGACCTGTGAGACTTGTGGGAGTAAGCAGCTGAAGAAGAACATTAAGCGGCACCTCCGAGTGCACGAAACTAGTAGTTCATCTGTGACATTTACATGCAAATACAAAGGTTGCACCCGGACATTCTCAACTAAATCTAATCTTCGTAAGCACGTGAAGGCTGTGCACTTTGAAGAAAAGCCCTTTGTGTGTTGTTTTCCTGGTTGCGGCATGAGATTCTCTTACAAACATGTGAGAGATAACCATGAGAAAAGCGGCGCACATGTTTATAGCCTTGGGGACGAAGCTGATGAACAATACAGGTCAAGGCCTAGAGGAGGCAGGAAGAGAAAGTGTCCAACAGTTGAAATGCTTATTAGAAAGAGAGTTACTCCTCCCAGTCAATTGGAGCATTGGTTACTTGGAGAGGAGACTGAGTA | 929 | 0.436 | MRTPKCTRQHVLTLMDQYQEGRPPVKLHQGCLNHALQYERLFVCMLGDCHASYRRKDHLTRHLLQHKGKTFKCPIENCNRDFAFQGNMTRHVKEFHDENSASANFGSEKLYVCPEIGCEKVFKFASRLKKHENSHVKLETVEALCLEPGCMKHFTNVECLKAHIKSCHQYVTCETCGSKQLKKNIKRHLRVHETSSSSVTFTCKYKGCTRTFSTKSNLRKHVKAVHFEEKPFVCCFPGCGMRFSYKHVRDNHEKSGAHVYSLGDEADEQYRSRPRGGRKRKCPTVEMLIRKRVTPPSQLEHWLLGEETE | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva07g00932 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 96 | IPR013087 | - | |
| Bva07g00932 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 113 | 135 | IPR013087 | - | |
| Bva07g00932 | 309 | PANTHER | - | 37 | 298 | - | - | |
| Bva07g00932 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 107 | 137 | IPR036236 | - | |
| Bva07g00932 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 44 | 66 | IPR013087 | - | |
| Bva07g00932 | 309 | Gene3D | Classic Zinc Finger | 69 | 97 | - | - | |
| Bva07g00932 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 42 | 71 | IPR013087 | - | |
| Bva07g00932 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 101 | IPR013087 | - | |
| Bva07g00932 | 309 | Gene3D | Classic Zinc Finger | 196 | 270 | - | - | |
| Bva07g00932 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 183 | 238 | IPR036236 | - | |
| Bva07g00932 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 234 | 258 | IPR013087 | - | |
| Bva07g00932 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 201 | 231 | IPR013087 | - | |
| Bva07g00932 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 69 | 97 | IPR036236 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 42 | 66 | IPR013087 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 71 | 96 | IPR013087 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 171 | 192 | IPR013087 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 232 | 258 | IPR013087 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 111 | 135 | IPR013087 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 143 | 168 | IPR013087 | - | |
| Bva07g00932 | 309 | SMART | c2h2final6 | 201 | 226 | IPR013087 | - | |
| Bva07g00932 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 145 | 168 | IPR013087 | - | |
| Bva07g00932 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 111 | 140 | IPR013087 | - | |
| Bva07g00932 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 39 | 68 | IPR036236 | - | |
| Bva07g00932 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 203 | 226 | IPR013087 | - | |
| Bva07g00932 | 309 | Gene3D | Classic Zinc Finger | 35 | 68 | - | - | |
| Bva07g00932 | 309 | PANTHER | ZINC FINGER PROTEIN | 37 | 298 | - | - | |
| Bva07g00932 | 309 | Pfam | Zinc finger, C2H2 type | 42 | 66 | IPR013087 | - | |
| Bva07g00932 | 309 | Pfam | Zinc finger, C2H2 type | 71 | 96 | IPR013087 | - | |
| Bva07g00932 | 309 | Pfam | Zinc finger, C2H2 type | 111 | 135 | IPR013087 | - | |
| Bva07g00932 | 309 | Pfam | Zinc finger, C2H2 type | 201 | 226 | IPR013087 | - | |
| Bva07g00932 | 309 | Gene3D | Classic Zinc Finger | 98 | 171 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva07g00932 | Bva-Chr7 | 11405840 | 11409707 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva07g00932 | 38 | 261 | C2H2 Transcription Factor Family | AT1G72050 | 51.812 | 1.01e-93 | 279 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Bva07g00932 | zf-C2H2 | 0.0071 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva07g00932 | K09191 | - | gmx:100801812 | 416.772 |