Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00866 ATGGATGCGCTCGAGTCGAACCCTAATCCGCCGCATCTACCTTCGTCGGAGACCCTGCTTTCCTACGATCAGAATCCCTCTCTCCCTCCGCCTTCAGAAAATTTCGCATCCAGTTACAGTAGTGCATCGCAGCAATTTGAACAACATGTTGCGCCTTCTGATGTTCAACACCTATCGAAAACCTCAGATTTCGATGTTCAGAACGTGAACGGTGGTGCTCCATCTAACGGCCACACCAATTACCATATTGCTAAGCCTTTGCTGTCGGAGAACGGGTTGACGAATACCCAGAGTGGCACCGACAAGGATCACTCTGGCGGTGAAGAGGAGACCACGAGCAAGCGCCGACGACGGAGTCGGTGGGACCCACAGCCCGAGTCCAATGACCAGAGCGGTGGTGAATCAGGTAGCGGAGCCAGGAAAAGGAAGTCTCGTTGGGCTGATGATGAGCCCAAGCCGGTGATTCAGCTCCCTGATTTCATGGGTGGTATCGAATTTGATCCTGAAATACAAGCTTTGAACAGTAGGCTCCTTGAGATTAGTCGAATGCTACAATCAGGTTTGCCTTTAGATGATCGCCCAGAAGGTGCACGATCGCCTTCACCTGAAcctatatatgataatatggGAATTAGGATTAACACTAGAGAGTATCGTGCTCGTGAGAGATTGCAAAAGGAGAGACAAGAAATTATATCTCagattataaagaaaaacccAGCTTTTAAGCCACCAGCCGATTATAGGCCACCTAAGCTTCAGAAGAAGCTTTATATACCCATGAAAGAATACCCTGGATATAATTTCATAGGGCTTATTATCGGTCCAAGAGGTAACACCCAGAAGCGGATGGAGAGAGAAACTGGTGCTAAAATTGTGATTCGTGGTAAAGGGTCAGTGAAAGAGGGTAGGTTGCAACAGAAGAGAGACTTGAAACCTGATCCTTCGGAGAATGAAGATTTGCATGTTTTAGTTGAGGCAGAAACGCAGGAATCACTTGATGCTGCTGCTGGGATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAACTTAGAGAACTTGCTGCCTTGAATGGCACAATTAGGGATGAAGAATATTGCCGGCTCTGTGGTGAACCTGGTCATCGCCAATATGCCTGCCCCACACGTACCTCTACATTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCACCCGAGCATAGATTGTCCAGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTTCTGGCAGAGTTGGGAGGGACAGTGCCTGAATCGGCAACAAAGCAAAGCACTACATTGGCCCTTGGTCCAGGAAACTCTGGGAACAATCCTCCTTGGGCTAATAATTCCAGCTCAACTGCTAGTTCAGCACATCCTGGATTAGGATCTAATcctttgaaaaaagaaattgacgATACCAATTTGTATATTGGATATTTGCCTCCTACTCTTGATGATGATGGCCTGATTCAGTTGTTTCAACAATTCGGTGACATTGTTATGGCAAAGGTTATCAAGGATCGAGTAACTGGCTTGAGTAAAGGATACGGCTTTGTAAAATATGCTGATATTCAAATGGCTAATAGTGCAATTATGGCCATGAATGGTTATCGACTAGAGGGTCGAACCATTGCAGTGAGGGTTGCTGGTAAGCCTCCTCAGCCGACTGTACCTCCTGGTCCCCCAGCATCAGCCATGCCTACATATCCTGTTTCAACCCAGCCAGTCGGTGCTTATCCATCCCAACATTACGCTGCTGGTGGTCCCCTTGGGAGTGCACCTCCTCCAAGTTATGGAGGAACCCCAGTTCCATGGGGACCTCCTGTTCCTCCTCCATATGCACCTTATGCTCCTCCCCCTCCTGGGTCGACAATGTATCCTCCTGTTCCAGGTCAGCCTATGCCCCTATATGGTGTGCAGTATCCTCCAGTACCAACAGGCCCCCCTGGTGCCCCTTCGCAGCCTGCAACGTCCAGTGAAGCACAGCAGAGTTATCCTCCTGGAGTGCAGTCTGATAATAGTACCTCTACTCAATCTGTATCCACCAATATTTATGGGAGCACAGTACCTACAATGCCACCTACATATCCTGCATCTTATGGTTATCCGCCTTATTACAATGCagttcctcctcctcctcccccACCTGGCCCTGTACCTGTCTCGACTTCAGATCAGTCCCAGGGCATTGGGAATGTGCCTTGGGCCACTAATCCTCCGGTGCCACCTCCTCCATCTGCAGAGAAGACAACATATGGTTCAGATCAATCCCAGGGCATTGGAAATGTCCCTTGGGCCACAAATCCTCCAGTGCCTCCTCCTCCTTCATCTGCAGAAAAGACAGCCTATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATG 2444 0.4722 MDALESNPNPPHLPSSETLLSYDQNPSLPPPSENFASSYSSASQQFEQHVAPSDVQHLSKTSDFDVQNVNGGAPSNGHTNYHIAKPLLSENGLTNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPESNDQSGGESGSGARKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQSTTLALGPGNSGNNPPWANNSSSTASSAHPGLGSNPLKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGDIVMAKVIKDRVTGLSKGYGFVKYADIQMANSAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPVSTQPVGAYPSQHYAAGGPLGSAPPPSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPVPGQPMPLYGVQYPPVPTGPPGAPSQPATSSEAQQSYPPGVQSDNSTSTQSVSTNIYGSTVPTMPPTYPASYGYPPYYNAVPPPPPPPGPVPVSTSDQSQGIGNVPWATNPPVPPPPSAEKTTYGSDQSQGIGNVPWATNPPVPPPPSSAEKTAYGADSEYEKFMAEMK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00866 814 MobiDBLite consensus disorder prediction 102 124 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 766 781 - -
Bva07g00866 814 Gene3D - 456 565 IPR012677 -
Bva07g00866 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 490 568 IPR000504 GO:0003723
Bva07g00866 814 Pfam KH domain 268 316 IPR004088 GO:0003723
Bva07g00866 814 MobiDBLite consensus disorder prediction 654 698 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 654 669 - -
Bva07g00866 814 SMART rrm1_1 491 564 IPR000504 GO:0003723
Bva07g00866 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 492 561 IPR000504 GO:0003723
Bva07g00866 814 MobiDBLite consensus disorder prediction 298 318 - -
Bva07g00866 814 PANTHER RNA-BINDING PROTEIN RELATED 60 772 IPR045071 -
Bva07g00866 814 PANTHER RNA-BINDING PROTEIN RELATED 756 814 IPR045071 -
Bva07g00866 814 Gene3D - 167 245 - -
Bva07g00866 814 ProSiteProfiles Type-1 KH domain profile. 268 340 - -
Bva07g00866 814 ProSiteProfiles Zinc finger CCHC-type profile. 401 415 IPR001878 GO:0003676|GO:0008270
Bva07g00866 814 MobiDBLite consensus disorder prediction 442 482 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 670 698 - -
Bva07g00866 814 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 253 379 IPR036612 GO:0003723
Bva07g00866 814 MobiDBLite consensus disorder prediction 733 803 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 442 477 - -
Bva07g00866 814 CDD SF1_like-KH 254 370 - -
Bva07g00866 814 Gene3D K Homology domain, type 1 250 372 IPR036612 GO:0003723
Bva07g00866 814 MobiDBLite consensus disorder prediction 1 158 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 567 588 - -
Bva07g00866 814 SMART c2hcfinal6 374 390 IPR001878 GO:0003676|GO:0008270
Bva07g00866 814 SMART c2hcfinal6 400 416 IPR001878 GO:0003676|GO:0008270
Bva07g00866 814 MobiDBLite consensus disorder prediction 136 152 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 9 77 - -
Bva07g00866 814 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 60 772 - -
Bva07g00866 814 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 756 814 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 187 208 - -
Bva07g00866 814 MobiDBLite consensus disorder prediction 569 585 - -
Bva07g00866 814 SUPERFAMILY RNA-binding domain, RBD 485 579 IPR035979 GO:0003676
Bva07g00866 814 SUPERFAMILY Retrovirus zinc finger-like domains 371 417 IPR036875 GO:0003676|GO:0008270
Bva07g00866 814 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Bva07g00866 814 Pfam Splicing factor 1 helix-hairpin domain 142 249 IPR032570 -
Bva07g00866 814 SMART kh_6 253 345 IPR004087 GO:0003676
Bva07g00866 814 Gene3D - 373 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00866 Bva-Chr7 10593599 10598860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00866 490 681 Eukaryotic Initiation Factors Gene Family AT3G16380 27.570 2.17e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00866 K13095 - gmx:100800982 1101.27