Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00707 ATGATCGAAACGGGTCACCTTGCTTTTCTGATTCAGAGCTCAAATGGTCGTTTGAATCTGCTTCCTTTGGAGCAGCACTGGAGTCTGGTGGAAAGGTCAAATTTTTGGGCTGTGGTTGACTCAATGGGTTCAAGGAAATTCTGGGTGTGGCCTGGAGGGAAGTTTGGGTGGTTAATGATTCCTCCTGAAGAGTGTTCTGTGATTGAGGAAAATCTTGGGGGCTTGTTAGATTCTGCTGTCAGAGTTGTTATTGTTCTGATCATGACTAGGGCTGTGCGCAATAGGATACTCAAGGATGCGAATGGTGACATTAGTGATCATCTACGCAATCACATTCATTTAACTAATTGTATTCACTTGAAGAACCACATGCACAAGAACAGCCCAATACTGGCTAATAGGTCACTTATGAGGGACCTTGTTGTGCTGCAGAGGTCACGGTCTCTCAGGGACCCTTCTGCAAGTCCTCCTTCTTGGCATTCACCTTCTATTGTCGATGTGCTTTCCAAGAGAGTTGAGAATGATACAATGATTCAGGAGGGAAGAAGGTCAGTAGGCATTGAACGCAGGAAGGCAGGAAGAAGACCATCAGGAACCTCACCACCCTTGATTGCTTTAGGCACATCAAAAGTTGCTCCAGGTGAGGTGACTATGGGGAATGATGGGGTAGCAGCAAGTAGTGAACGTAGTAGCTGGAGTGGAATAGGTAATGGGAGAAAGGTTGGAAGAGAAGAATCTAGTAGGAAGAGTGATAGACCTGATCTTTTGGGTGTCAGTGAAGAGCAACCTCTCAATCTTGATGGTAAAGATTTGGCTCATGATGTTGTTTCAAGGCACTCTGTATCTAGAGATAGAAATAGTAAACAAAGGGGGAAGCATGTTCGTGATGTTCAAGTTAAGACACTTTCTGAGCAGCTAAATAATGTCCCATTGGATAGCGATGATTTAGCTTCTTCCAACATTCATTTTCGTGGAAGGTATCCTCGACACGAGAAAACAATGAAGCCAGAAGCCAGCATGCGTGGTGGATCGAATAAGGTTAAGAGGCGTAAGTTCCGAAGTACAAGAAGAACTTGGGCTGCTACTGCATCTAGAGATACTGGCGGAGCTGAAAATGAGTTGTCTGTGGCTTCTAACTCATTAGCTCAAGGTTCAATCCACCATAAACATCACATGGATGAGGCAGAGCATGCAGATGAAAATGTCACTAGAGCTCCCAAAAATGGGTGCGGCATTCCTTGGAATTGGTCTAGAATTCATCACAGAGGCAAAACATTCCTTGACATAGCTGGAAGAAGTTTCTCTTGTGGTTTATCTGACTCAAGGTTAAAGAAGGGGACCTTGACTGCCAATGGAAGAAATTTTTCTGACATGCCTGTGGCATCTGACCACTCAAGCTCATCTACCAAGACTCATGCAGAAGCACTGCCTTTACTAGTTGAGGCATCTGGATCTTATGGAAGCAGTGACAATGCTTGTTGGAGGGATGACTATTCTGGGGAACTTGGTATTTTTGCTAATAACTTGTTCAAGAATGATGTTGACTCTGACCTTGCTTCTGAAGCTAGATCAGGTGATCAGCACAAGTTGAGAGGGAATCGCCGTAGCAGGCATCAAAGCTTAACACAAAAATACATGCCACGAACCTTCAGAGATATGGTTGGACAGAATCTGGTGGCACAAGCTCTTTCAAATGCAGTTATGAGAAGGAAGGTTGGATTGTTGTATGTGTTTTATGGACCTCATGGCACTGGTAAGACTTCCTGTGCTCACATATTTGCCAGAGCTTTAAATTGCCAGTCTTTAGAACATCCAAAACCTTGTGGCTTTTGCAACTCTTGCATTGCACATGATATGGGTAAGAGTAGAAGTATAAGGGAAGTTGGTCCAGTTAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAGTATGATTGTTTCCCAGCTTCCATCACACTACAGAGTGTTTATTTTTGATGACTGTGATACTTTATCCACTGAGTGCTGGAGTGCTATATCAAAGGTCATTGATCGAGCACCTAGACGCCTGGTTTTTATCCTTGTCAGTTCGAGTCTGGATGTATTGcctcatataataatatccaGGTGTcagaaattcttttttccaaaGCTGAAGGATGCagatattatttatacattgcAGTTGATTGCAACCAAAGAAGGTCTAGAAATAGATAACGATGCCCTTAAACTCATTGCATCAAGATCAGATGGTTCACTGAGAGATGCTGAGATGACCCTCGAACAACTTAGCTTGCTTGGCCAAAGAATATCTGTTCCTCTAGTTCAGGAATTGGTAGGGCTTATCTCTGATGAGAAATTGGTCGATCTGCTTGATTTGGCATTATCTGCTGACACAGTTAATACTGTGAAGAATTTGAGAGTAATCATGGAAACTGGTGTAGAGCCATTAGCTTTAATGTCACAGCTTGCTACAGTAATTACTGATATACTTGCTGGGACTTACGATTTGACAAAAGATAGACGAAGAAGGAAGTTCTTTCGGAGAGAGCCATTATCCAAAGGGGACATGGAAAAGCTACGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAATTGAGAATGTCTAATGACAAATTGACATGGCTGACAGCTGCGTTGCTTCAACTTGCTCCTGACCAGCAATATATGTTGCCTACTTCATCAGATGTTAGTTTCAATCATAGTCCATTAGCATTAAACAATGCAGATGTGAAAGAAGCAGCCAGAAGAACCAGCAAACAAGTTGAAATTCCTAATAAAGAGAGACGCTTGTCAATGGATGCTAGAACAGATAATCTCCATGCTGGAAGTTCTGCTGATGGTATGGCAAAGGGTGTTAgtttagagagaaaaaggcATGCTGGAAATGGTGTTGCTCCTCAGCTGACATCTTCACATGTTACCAATATGACTAGGATGAATGACAGGCAGATTTTTGGTAAAGGTCGTAAAGGAATTGAAGAAATATGGTTAGAGATGCTAGAGAGGATTCAAGTTTCTGGTctgaaagaatttttatatcaagAAGGAAAGCTCATCTCAGTTAGTTTTGGTGCAGCTCCAACCGTGCAGCTTATGTTTAGTTCCCAATTGACCAAATCCACTGCTGAGAAGTTCAGGGGCCACATCTTACAGGCATTTGAGTCCATCCTTGGATCTTCTGTGACAATAGAAATTAGATGTGAGCCAAATAAAGATGCAGGATCAGCATCTCAACTGCCCCTTATCTTGCCTGCTACGAAAGATAGCTCATCAAACTATCAGATTAGAGACTTAAATGGAGCTGGTGCTGAAGCCCATACTTTGCATCCTGATTCTGTTGAAAAAAGAGGGGGTGAAATTGTAGAAGAAGCAGAGTCTCCCAGACAGCGCAATCCTAATGAGCAGCAGGTTGATGTTCATACAGCATCTACTGCACCCAAAAAGCCAACTGTGGTGTCACACCCAGATAGAAGAAATGTCGGGAGACAAAGTCAGAGTCAGAGTCTTGTGAGAAGTAAGGTATCCCTTGCTCATGTAATCCAGCAGGCTGAAGGATGTACACGGCAAAGTGGGTGGTCGAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAACCTAGGTCGAGAAGCTTACTATGCTGGAAAGCATCAAGAGTAACCCGTCGAAAGCTTTCAAGATTGAAGATTAGGACCCGAAAAGCACATGCATTGCTGAATCTGGTTTCATGTGGGAAATGTCTCTCCACAAAATCTCCACGGTA 3797 0.4216 MIETGHLAFLIQSSNGRLNLLPLEQHWSLVERSNFWAVVDSMGSRKFWVWPGGKFGWLMIPPEECSVIEENLGGLLDSAVRVVIVLIMTRAVRNRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILANRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIVDVLSKRVENDTMIQEGRRSVGIERRKAGRRPSGTSPPLIALGTSKVAPGEVTMGNDGVAASSERSSWSGIGNGRKVGREESSRKSDRPDLLGVSEEQPLNLDGKDLAHDVVSRHSVSRDRNSKQRGKHVRDVQVKTLSEQLNNVPLDSDDLASSNIHFRGRYPRHEKTMKPEASMRGGSNKVKRRKFRSTRRTWAATASRDTGGAENELSVASNSLAQGSIHHKHHMDEAEHADENVTRAPKNGCGIPWNWSRIHHRGKTFLDIAGRSFSCGLSDSRLKKGTLTANGRNFSDMPVASDHSSSSTKTHAEALPLLVEASGSYGSSDNACWRDDYSGELGIFANNLFKNDVDSDLASEARSGDQHKLRGNRRSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAHIFARALNCQSLEHPKPCGFCNSCIAHDMGKSRSIREVGPVSNFDFESIMDLLDSMIVSQLPSHYRVFIFDDCDTLSTECWSAISKVIDRAPRRLVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQLIATKEGLEIDNDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDLTKDRRRRKFFRREPLSKGDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDVSFNHSPLALNNADVKEAARRTSKQVEIPNKERRLSMDARTDNLHAGSSADGMAKGVSLERKRHAGNGVAPQLTSSHVTNMTRMNDRQIFGKGRKGIEEIWLEMLERIQVSGLKEFLYQEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESILGSSVTIEIRCEPNKDAGSASQLPLILPATKDSSSNYQIRDLNGAGAEAHTLHPDSVEKRGGEIVEEAESPRQRNPNEQQVDVHTASTAPKKPTVVSHPDRRNVGRQSQSQSLVRSKVSLAHVIQQAEGCTRQSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRTRKAHALLNLVSCGKCLSTKSPR 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00707 1265 MobiDBLite consensus disorder prediction 175 195 - -
Bva07g00707 1265 MobiDBLite consensus disorder prediction 175 296 - -
Bva07g00707 1265 Pfam DNA polymerase III, delta subunit 556 713 - -
Bva07g00707 1265 PANTHER PROTEIN STICHEL-LIKE 3 268 1232 - -
Bva07g00707 1265 SUPERFAMILY post-AAA+ oligomerization domain-like 784 887 IPR008921 GO:0003677|GO:0006260
Bva07g00707 1265 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 539 887 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bva07g00707 1265 MobiDBLite consensus disorder prediction 1128 1173 - -
Bva07g00707 1265 Pfam DNA polymerase III subunits gamma and tau domain III 769 888 IPR022754 GO:0003887
Bva07g00707 1265 MobiDBLite consensus disorder prediction 335 374 - -
Bva07g00707 1265 CDD HLD_clamp_pol_III_gamma_tau 713 776 IPR045085 -
Bva07g00707 1265 MobiDBLite consensus disorder prediction 1135 1153 - -
Bva07g00707 1265 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 268 1232 - -
Bva07g00707 1265 MobiDBLite consensus disorder prediction 241 256 - -
Bva07g00707 1265 MobiDBLite consensus disorder prediction 521 540 - -
Bva07g00707 1265 Gene3D - 714 776 - -
Bva07g00707 1265 MobiDBLite consensus disorder prediction 266 296 - -
Bva07g00707 1265 Coils Coil 853 876 - -
Bva07g00707 1265 Gene3D - 531 710 IPR027417 -
Bva07g00707 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 760 IPR027417 -
Bva07g00707 1265 SMART AAA_5 572 713 IPR003593 -
Bva07g00707 1265 CDD AAA 554 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00707 Bva-Chr7 8916063 8925075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00707 539 837 Core DNA Replication Machinery Family AT1G21690 22.801 2.33e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00707 - - gmx:100809005 1821.21