Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00673 ATGGCTTCGGGGGCTATATTCTCCTCCCTGCGGCGGAGGAGGTCGCCGTCGTTGGAGGCGTTTCTCGCTCCGGTTGACCTCACAGATGTTGCCCTGGTACAGACCCTTGTCTCCGTTGCCACCGAGCTCGTTTCCTTATTCTCCGagtgcttcttcttcttccagcGCAAGAATTCGAGGTCGCTTATCAGAAAAGTGGAGATATTTCAGTTGCTTTTGGAGTATTTGAGCAGTTCGAGTACGGTGCTTCCCCCAGCTGCGTTGCTTTGTCTCAAAGAACTTTATTTGCTGCTCTATCGGTCCAAGATTCTCCTCGATTATTGCGCACGATCCAGTAAGTTGTGGCTTTTGCTTCAAAACCATTCAATTTCTGGTCATTTCCATGATTTGAACCAAGAAATTTCGACCCTTCTGGATGTTTTCCCCATAAAGGATGTTGAACTAAGTGAGGATGTTAGGGAGCAGGTTGAGCTATTGCAGAAACAATCAAGGAGGGCTAAGTTGTTTATTGACAAAAAAGATGATGAACTAAGGATTCGCTTTTGTTCATTTCTTGATGAGTTTGAGAATGGGCGGATTCCTGATTCTGATGAATTGAGATCATTTTTTGTGGAGAAATTGCAGATTGTGGATGCCAGAAGTTGTAGAAATGAAATTGAGTCTCTGGAGGAGCAGATTGTAAATCATGAAGGAGATGTTGAGCCAACAATTTCTGTGCTCAATGGGTTGGTTGCGATGACAAGGTATTGTAGATTTTTGCTTTTTGGATTTGAGGGGGAAGACATGGACATTGGAAATGTAAATCAGAGAAAGTCCAAGAGGAAATTGATTACACAAGAAATTGCTGAAACATTCTCAACTATTCCAAAGGACTTTTGTTGTCCAATATCATTGGATTTGATGTCAGACCCAGTGATAATCTCCACAGGACAAACCTACGATAGAAGTTCCATATCTAGGTGGATGGAAGAAGGACATTGTACTTGTCCGAAAACGGGCCAAATGCTTGCCCACACCCGGCTTGTGCCTAACCGGGCTCTAAGGAATTTGATTGTACAATGGTGCACAGCACATGGAATCCCCTATGAAACACCAGAGGTCATCGATGCTTCAGCTGAAAGTTTTGCATCAGCTTCTCCAACAAAAGCTGCCCTTGAAGCCAACAGAGCAACAGCATCACTTCTCATTCATCAGCTGGCAAATGGATCACAGGCCGCAAAGACTGTAGCTGCTCAGGAGATACGTTTGCTAGCAAAAACAGGCAAAGAAAATCGTGCCTTCATTGCAGAAGCCGGGGCAATCCCCTATCTTCAGAGTTTACTTTCATCTCCTAACGCCATTGCTCAGGAGAATTCTGTAACTGCATTACTCAATCTAtcaatttttgagaaaaataaaagtcggATCATGGATGAGGAAGGGTGTCTGGGATCAATAGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAGAATGCTGCAGCCACATTGTTTAGCTTGTCTGCTGTCCATGATTATAAGAAGAGGATTGCAGATAAGTTAGGAGCCGTTGAAGCTCTTGCTATGTTGTTGCAGGTGGGAACACCACGAGGGAAGAAGGATGCTGTAACAGCATTATTTAACCTATCAACACACACTGAGAATTGTGTTAGAATGATAGAAGCAGGAGCTGTAACAGCACTTGTTGTGGCTCTGGGAAATGAGGGAGTTGCCGAGGAAGCAGCCGGTGCCCTGGCCTTGATTGTCCGGCAACCTATTGGGGCCAAAGCAGTGGTGAAGGAGGAAGCAGCAGTAGCCGGATTGATTGGAATGATGCGTTGTGGGACACCAAGGGGGAAGGAGAATGCTGTTGCAGCTTTGCTCGAGTTGTGCCGGAGTGGTGGAACTGCAGCGACTGAAAGGGTGGTCAAGGCACCTGCTTTAGCCGGTTTGCTTCAAACACTGTTGTTTACGGGGACAAAGCGAGCAAGGCGAAAAGCAGCTTCACTTGCCCGAGTATTTCAGAGATGTGAAAATGCTTCTTTACATTATGGTGGATTAGGTGTAGGGTATGCGTTTGCCAGCAATTCAGCTGCAAATAGAGATACTAGCTTTGCTGGTGATGTTTCTGTACCAATGTCCATTTCTGTGCCTGTTTTGTA 2147 0.4457 MASGAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVATELVSLFSECFFFFQRKNSRSLIRKVEIFQLLLEYLSSSSTVLPPAALLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVELSEDVREQVELLQKQSRRAKLFIDKKDDELRIRFCSFLDEFENGRIPDSDELRSFFVEKLQIVDARSCRNEIESLEEQIVNHEGDVEPTISVLNGLVAMTRYCRFLLFGFEGEDMDIGNVNQRKSKRKLITQEIAETFSTIPKDFCCPISLDLMSDPVIISTGQTYDRSSISRWMEEGHCTCPKTGQMLAHTRLVPNRALRNLIVQWCTAHGIPYETPEVIDASAESFASASPTKAALEANRATASLLIHQLANGSQAAKTVAAQEIRLLAKTGKENRAFIAEAGAIPYLQSLLSSPNAIAQENSVTALLNLSIFEKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKLGAVEALAMLLQVGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVVALGNEGVAEEAAGALALIVRQPIGAKAVVKEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGTAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAANRDTSFAGDVSVPMSISVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00673 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Bva07g00673 715 PANTHER U BOX DOMAIN-CONTAINING 11 696 - -
Bva07g00673 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Bva07g00673 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Bva07g00673 715 SUPERFAMILY ARM repeat 392 669 IPR016024 -
Bva07g00673 715 SMART arm_5 506 546 IPR000225 GO:0005515
Bva07g00673 715 SMART arm_5 421 461 IPR000225 GO:0005515
Bva07g00673 715 SMART arm_5 586 627 IPR000225 GO:0005515
Bva07g00673 715 SMART arm_5 547 585 IPR000225 GO:0005515
Bva07g00673 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Bva07g00673 715 SUPERFAMILY RING/U-box 275 362 - -
Bva07g00673 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 696 - -
Bva07g00673 715 Coils Coil 212 232 - -
Bva07g00673 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Bva07g00673 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Bva07g00673 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Bva07g00673 715 Gene3D - 27 144 IPR036537 GO:0007166
Bva07g00673 715 Gene3D - 370 510 IPR011989 -
Bva07g00673 715 Gene3D - 511 667 IPR011989 -
Bva07g00673 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00673 Bva-Chr7 8601248 8604095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00673 1 715 U-box Gene Family AT1G29340 71.565 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00673 - - gmx:100811153 1149.04