Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00583 ATGGCAGACTATGAAGAGAGATACCAAGGTAATGGAGAGGACGTTGAGGCCTACGATGGTGGTTCCTCTCCCCTTGCTCGAGAAAGTAGCCATGGGGGTCCTGACGATCACAGCGATTCCAAATCTCGCCATGGATCTCGTGATTATGACAGAGAATCTTCAAGAAGCAGGGAAAAGGAACGAGAAAAGGGGAGAGATAaggagaggaagagagaaaaggagaaagacaGGGATAGGGAGAGAGATGTGGATAGAAGCAGGGAAAGGGACAGGGATGGAGAGAGAAGTAGAGATAGGGCAATAAGCAAAGACAGGGAAAGAGATCGGAATGGGGAGAGGGAAAGGGACCGTGATCACCACAGAGATAGACACAGAGACCGAAGTGAAAGGAGGGAAAGGGGGAGGGATAGAGATGATGTTGATTATCACAGAGGGGACTATGACAGACGAAGGGATTATGATAGAGATAGAGATGATGGGCACAGACGCAGGTCCCATTCACGTACAAGACATAGATCAAGGTCAAGGTCACGTTCACGCTCACGCTCAAAGAGCAAAAGGATTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCAATGTTAGCTAATGCTGCCGCTGCCGCTGCTGCAGGCCAGATCGCTGGGGCAACTCCTGCAATTCCGGGCATGTTTCAAAATGTGTTTCCAATGGCTACCAGTCAGGTGCAACCATTTGGTGCGCTTCCTGTCATGCCCATTCAGGCAATGACGCAACAGGCTACTAGACATGCTAGGCGGGTCTATGTTGGAGGACTCCCTCCTACTGCAAATGAACAgTCGGTTGCAACTTTCTTCAGTCAGGTTATGGCTAATATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTTgttaatgtatatattaacCATGACAAGAAGTTTGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTCTAGATGGGATTATTTTTGAGGGGGCGCCTGTTAAAGTGAGGAGACCTACTGATTATAATCCTTCTTTAGCTGCAACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTGGCTGCCGTTGGCTTAACTCCTGGCTCAGCTGGGGGACTTGATGGTCCTGATCGCATTTTTGTAGGGGGGCTTCCTTATTACTTTACAGAAACACAAATCAGGGAGCTATTGGAGACATTTGGTCCCCTTCGGGGTtttgatttggttaaagaTAGAGAAACAGGAAACTCAAAAGGCTATGCATTCTGTGTTTACCAAGACCTTGCAGTTACAGATATAGCTTGTGCAGCTttgaatggaataaaaatggGAGATAAGACTCTTACTGTTAGACGAGCGAATCAAGGTACTAGCCAGCCTAAACCTGAGCAAGAGAGCATATTAATGCATGCACAGCAGCAGATCGCTCTGCAGAAACTCATGCTTCAACCGGCATTAGTGGCTACAAAGGTTGTGTGTTTAACTCACGCGGTATCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTGTTGATGATATGAGACAGGAATGCTCAAAATTTGCCATTTGTAATTTGGTGAATGTTGTGATCCCTCGCCCAAATCCAAATGGGGAACCATCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGACGTCGAGGGTTCTACAAAGGCTCGTTCTGGATTGAATGGACGAAAGTTTGGCGGGAACCAAGTCGTAGCTGTCTTTTATCCAGAGAATAAATTTGCTGAGGGAGACTATGATGGCTA 1784 0.4552 MADYEERYQGNGEDVEAYDGGSSPLARESSHGGPDDHSDSKSRHGSRDYDRESSRSREKEREKGRDKERKREKEKDRDRERDVDRSRERDRDGERSRDRAISKDRERDRNGERERDRDHHRDRHRDRSERRERGRDRDDVDYHRGDYDRRRDYDRDRDDGHRRRSHSRTRHRSRSRSRSRSRSKSKRISGFDMAPPASAMLANAAAAAAAGQIAGATPAIPGMFQNVFPMATSQVQPFGALPVMPIQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTSQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKEDEDYEEIVDDMRQECSKFGNLVNVVIPRPNPNGEPSPGVGKVFLEYADVEGSTKARSGLNGRKFGGNQVVAVFYPENKFAEGDYDG 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00583 592 Coils Coil 57 77 - -
Bva07g00583 592 MobiDBLite consensus disorder prediction 30 163 - -
Bva07g00583 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 341 IPR000504 GO:0003723
Bva07g00583 592 SUPERFAMILY RNA-binding domain, RBD 379 582 IPR035979 GO:0003676
Bva07g00583 592 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 74 590 IPR006529 GO:0003723|GO:0005634|GO:0006397
Bva07g00583 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 456 IPR000504 GO:0003723
Bva07g00583 592 Gene3D - 486 591 IPR012677 -
Bva07g00583 592 Gene3D - 253 354 IPR012677 -
Bva07g00583 592 PANTHER RNA-BINDING PROTEIN 1 591 - -
Bva07g00583 592 CDD RRM3_U2AF65 490 578 - -
Bva07g00583 592 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 591 - -
Bva07g00583 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 583 IPR000504 GO:0003723
Bva07g00583 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 449 IPR000504 GO:0003723
Bva07g00583 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 575 IPR000504 GO:0003723
Bva07g00583 592 SMART rrm1_1 492 579 IPR000504 GO:0003723
Bva07g00583 592 SMART rrm1_1 259 337 IPR000504 GO:0003723
Bva07g00583 592 SMART rrm1_1 379 452 IPR000504 GO:0003723
Bva07g00583 592 MobiDBLite consensus disorder prediction 1 192 - -
Bva07g00583 592 MobiDBLite consensus disorder prediction 164 184 - -
Bva07g00583 592 CDD RRM1_U2AF65 257 339 - -
Bva07g00583 592 SUPERFAMILY RNA-binding domain, RBD 246 344 IPR035979 GO:0003676
Bva07g00583 592 CDD RRM2_U2AF65 378 454 - -
Bva07g00583 592 Gene3D - 369 474 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00583 Bva-Chr7 7612336 7618279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00583 380 571 Eukaryotic Initiation Factors Gene Family AT1G22760 26.396 2.74e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00583 K12837 - gmx:100793801 723.005