Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00574 ATGACTCGTGGGAAGGTTCAGATGAAGCGCATCGAGAACCCGGTGCACCGGCAAATTACCTTCTGCAAGCGCCGATCAGGGCTTCTTAAGAAGGCCAAGGAGCTCTCTGTGCTTTGCGACGCTGAAATTGGCATTGTCATTTTCTCCCCTCATGGAAAGCTCTATGAACTATCCACCAAAggaacCATGAAAGGGCTCATAGAGAGGTACATGAATTGCACCCATGGGGCTCTGCCTGAAGCTGCCATTGAAGCACATCCTTTGGATTCTAAGGAGGACATTCATGTGCTCAAACAAGAAATTGAGACAATGCAAAAGGGTCTCGGGTATTTATTTGGAGGGGCAATCGAGACAATGTCCATTGATGAGTTAGAAGTATTGGAGAAGAACCTTGAAATTTGGATTTGTCATATTCGCTCAGTCAAGATAAacaatatgacacaagaagtCCAAACATTGAGGGATAAGGAAGGAGTACTCACAGCTGCAAATCTATATCTCAGAGATAAGCTTGTGGAGAATACTGGAATGACCAACTTTGCACCATTTCACACTGCGACTTCATACCCACAAGTTATACAGGATGAAATATTTCAGCTCTa 602 0.4269 MTRGKVQMKRIENPVHRQITFCKRRSGLLKKAKELSVLCDAEIGIVIFSPHGKLYELSTKGTMKGLIERYMNCTHGALPEAAIEAHPLDSKEDIHVLKQEIETMQKGLGYLFGGAIETMSIDELEVLEKNLEIWICHIRSVKINNMTQEVQTLRDKEGVLTAANLYLRDKLVENTGMTNFAPFHTATSYPQVIQDEIFQL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00574 200 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bva07g00574 200 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva07g00574 200 Gene3D - 15 76 IPR036879 GO:0003677|GO:0046983
Bva07g00574 200 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 199 - -
Bva07g00574 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bva07g00574 200 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva07g00574 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 - -
Bva07g00574 200 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Bva07g00574 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva07g00574 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva07g00574 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva07g00574 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva07g00574 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva07g00574 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00574 Bva-Chr7 7508445 7515015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00574 1 200 MADS-box Gene Family AT1G71692 57.346 8.59e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva07g00574 K-box 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00574 - - gmx:100783345 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00574 07 7508445 7515015 Bva07g00574 07 7508445 7515015 ECH